Variant report

Variant	rs58345879
Chromosome Location	chr4:62513263-62513264
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10434206	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10434218	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11731846	0.89[ASN][1000 genomes]
rs13108954	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1497918	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2055265	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4383643	1.00[EUR][1000 genomes]
rs4860096	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs59147026	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60279254	0.85[EUR][1000 genomes]
rs6835465	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6836698	1.00[EUR][1000 genomes]
rs72614741	0.85[EUR][1000 genomes]
rs7666147	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9998456	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461377	chr4:62368762-62883431	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv594328	chr4:62368762-62883431	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1004815	chr4:62398737-62553769	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv537110	chr4:62398737-62553769	ZNF genes & repeats Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv879077	chr4:62419426-62545435	Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:62512600-62513400	Active TSS	ES-I3 Cell Line	embryonic stem cell
2	chr4:62512600-62513400	Active TSS	ES-WA7 Cell Line	embryonic stem cell
3	chr4:62512600-62513400	Active TSS	HUES6 Cell Line	embryonic stem cell
4	chr4:62512600-62513400	Active TSS	iPS-15b Cell Line	embryonic stem cell
5	chr4:62512600-62513400	Active TSS	HepG2	liver
6	chr4:62512600-62516600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr4:62513000-62513800	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr4:62513000-62514400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr4:62513200-62513400	Weak transcription	HUES64 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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