Variant report
| Variant | rs58349979 |
|---|---|
| Chromosome Location | chr2:67525447-67525448 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs1384743 | 0.83[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs1384744 | 0.83[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs17603029 | 0.83[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs2170703 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs4274583 | 0.84[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs4605358 | 0.84[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs56880806 | 0.89[EUR][1000 genomes] |
| rs60181254 | 0.84[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs62156538 | 0.83[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs62156540 | 0.83[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs62156541 | 0.83[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs62156542 | 0.89[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs62156547 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs62158280 | 0.89[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs62158281 | 0.84[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs62158282 | 0.88[EUR][1000 genomes] |
| rs6741192 | 0.84[AMR][1000 genomes] |
| rs7573357 | 0.84[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs7606736 | 0.84[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs874236 | 0.84[AMR][1000 genomes];0.89[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1008584 | chr2:67168244-67703601 | Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 21 gene(s) | inside rSNPs | diseases |
| 2 | nsv535775 | chr2:67168244-67703601 | Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 21 gene(s) | inside rSNPs | diseases |
| 3 | nsv534389 | chr2:67388428-68225338 | Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 36 gene(s) | inside rSNPs | diseases |
| 4 | nsv834249 | chr2:67515471-67691605 | Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 12 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr2:67523600-67527400 | Weak transcription | H1 Derived Mesenchymal Stem Cells | ES cell derived |
| 2 | chr2:67525200-67525800 | Enhancers | Fetal Stomach | stomach |
