Variant report

Variant	rs58355459
Chromosome Location	chr1:211778189-211778190
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:211750136..211754035-chr1:211775376..211778750,5	MCF-7	breast:
2	chr1:211749761..211758387-chr1:211774495..211787871,24	K562	blood:
3	chr1:211749584..211755940-chr1:211774898..211785859,28	K562	blood:
4	chr1:211777656..211789537-chr1:211792028..211798981,15	K562	blood:
5	chr1:211759135..211762333-chr1:211776227..211780241,4	K562	blood:
6	chr1:211770870..211774910-chr1:211776208..211782840,10	K562	blood:
7	chr1:211775675..211778278-chr1:211779018..211782912,5	K562	blood:

No data

Variant related genes	Relation type
ENSG00000261314	Chromatin interaction
ENSG00000170385	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11119781	1.00[EUR][1000 genomes]
rs12059593	1.00[EUR][1000 genomes]
rs12059673	1.00[EUR][1000 genomes]
rs12061213	1.00[EUR][1000 genomes]
rs12069828	1.00[EUR][1000 genomes]
rs12084324	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12085440	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12085684	1.00[EUR][1000 genomes]
rs12086556	1.00[EUR][1000 genomes]
rs17017861	1.00[EUR][1000 genomes]
rs28463715	1.00[EUR][1000 genomes]
rs543948	0.80[AFR][1000 genomes]
rs55635902	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55766448	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55860373	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56299016	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73073399	1.00[EUR][1000 genomes]
rs73075304	1.00[EUR][1000 genomes]
rs73075309	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832514	chr1:211630247-211794963	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:211771600-211786200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr1:211772600-211780600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr1:211775200-211778600	Enhancers	Fetal Intestine Small	intestine
4	chr1:211775400-211778400	Enhancers	Liver	Liver
5	chr1:211775400-211778800	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr1:211776000-211778400	Weak transcription	GM12878-XiMat	blood
7	chr1:211776200-211779200	Weak transcription	Primary hematopoietic stem cells	blood
8	chr1:211776400-211779000	Weak transcription	Primary B cells from cord blood	blood
9	chr1:211776400-211779800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr1:211776800-211779400	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr1:211776800-211779600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr1:211777000-211778400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr1:211777000-211779200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
14	chr1:211777000-211779200	Weak transcription	Adipose Nuclei	Adipose
15	chr1:211777000-211779400	Flanking Active TSS	HepG2	liver
16	chr1:211777000-211779800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr1:211777000-211780600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr1:211777000-211780600	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chr1:211777000-211781000	Weak transcription	Stomach Mucosa	stomach
20	chr1:211777000-211782600	Weak transcription	Hela-S3	cervix
21	chr1:211777000-211786600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr1:211777200-211779400	Weak transcription	Lung	lung
23	chr1:211777200-211782600	Weak transcription	Osteobl	bone
24	chr1:211777200-211786200	Weak transcription	NHLF	lung
25	chr1:211777400-211780600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr1:211777400-211784200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr1:211777400-211784200	Weak transcription	NHDF-Ad	bronchial
28	chr1:211777600-211779000	Weak transcription	Duodenum Mucosa	Duodenum
29	chr1:211777600-211780600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
30	chr1:211777600-211782600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr1:211777800-211778200	Enhancers	Small Intestine	intestine
32	chr1:211777800-211778600	Enhancers	A549	lung
33	chr1:211777800-211778800	Flanking Active TSS	K562	blood
34	chr1:211778000-211778200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
35	chr1:211778000-211778200	Flanking Active TSS	Placenta	Placenta
36	chr1:211778000-211779000	Enhancers	Primary neutrophils fromperipheralblood	blood
37	chr1:211778000-211780000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
38	chr1:211778000-211780600	Weak transcription	Fetal Intestine Large	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links