Variant report

Variant	rs58356687
Chromosome Location	chr15:43664588-43664589
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:2)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:2 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MXI1	chr15:43661956-43664627	SK-N-SH	brain:	n/a	n/a
2	HCFC1	chr15:43661352-43665311	Hela-S3	cervix:	n/a	n/a

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:43663538..43665462-chr15:43666150..43668012,2	MCF-7	breast:
2	chr15:43638723..43640590-chr15:43663770..43665773,2	K562	blood:
3	chr15:43613133..43615237-chr15:43663798..43666192,2	K562	blood:
4	chr15:43664348..43666203-chr15:44064640..44066598,2	K562	blood:
5	chr15:43663323..43666198-chr15:43675979..43677850,2	K562	blood:
6	chr15:43662908..43667194-chr15:43669241..43672354,4	K562	blood:
7	chr15:43618581..43624264-chr15:43661265..43664929,7	MCF-7	breast:
8	chr15:43620224..43622600-chr15:43663902..43665478,2	MCF-7	breast:
9	chr15:43663018..43665983-chr15:43682052..43684536,2	MCF-7	breast:
10	chr15:43620486..43624109-chr15:43661175..43665421,4	K562	blood:
11	chr15:43619535..43624096-chr15:43662038..43665421,4	K562	blood:
12	chr15:43661722..43663327-chr15:43663935..43666689,3	MCF-7	breast:

No data

Variant related genes	Relation type
ZSCAN29	TF binding region
TUBGCP4	TF binding region
ENSG00000140265	Chromatin interaction
ENSG00000168806	Chromatin interaction
ENSG00000243871	Chromatin interaction
ENSG00000137822	Chromatin interaction
ENSG00000168803	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs12324573	0.91[ASN][1000 genomes]
rs2004809	0.87[ASN][1000 genomes]
rs4419035	0.87[ASN][1000 genomes]
rs999025	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534649	chr15:43591116-43851142	Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' Strong transcription Enhancers Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	esv1846172	chr15:43632138-44116986	Bivalent Enhancer Weak transcription Genic enhancers Strong transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	101 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:43661400-43664800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr15:43662400-43664600	Active TSS	HUES48 Cell Line	embryonic stem cell
3	chr15:43662600-43665000	Active TSS	GM12878-XiMat	blood
4	chr15:43662800-43664600	Active TSS	Brain Angular Gyrus	brain
5	chr15:43662800-43664600	Active TSS	K562	blood
6	chr15:43662800-43665200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
7	chr15:43663400-43664600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr15:43663400-43664600	Flanking Active TSS	HMEC	breast
9	chr15:43663400-43664800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr15:43663600-43664600	Flanking Active TSS	Primary B cells from cord blood	blood
11	chr15:43663600-43664600	Flanking Active TSS	Primary hematopoietic stem cells	blood
12	chr15:43663600-43664600	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr15:43663600-43664600	Flanking Active TSS	Fetal Brain Female	brain
14	chr15:43663600-43664800	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
15	chr15:43663600-43664800	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr15:43663800-43664600	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
17	chr15:43663800-43664600	Flanking Active TSS	Duodenum Mucosa	Duodenum
18	chr15:43663800-43664800	Flanking Active TSS	Primary T cells from cord blood	blood
19	chr15:43663800-43664800	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
20	chr15:43663800-43664800	Flanking Active TSS	NHEK	skin
21	chr15:43663800-43665000	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr15:43664000-43664600	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
23	chr15:43664000-43664600	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
24	chr15:43664000-43664600	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr15:43664000-43664600	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
26	chr15:43664000-43664600	Enhancers	Primary monocytes fromperipheralblood	blood
27	chr15:43664000-43664600	Enhancers	Primary B cells from peripheral blood	blood
28	chr15:43664000-43664600	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
29	chr15:43664000-43664600	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
30	chr15:43664000-43664600	Flanking Active TSS	Brain Germinal Matrix	brain
31	chr15:43664000-43664600	Enhancers	Fetal Thymus	thymus
32	chr15:43664000-43664600	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
33	chr15:43664000-43664600	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
34	chr15:43664000-43664600	Enhancers	Stomach Mucosa	stomach
35	chr15:43664000-43664800	Flanking Active TSS	Brain Anterior Caudate	brain
36	chr15:43664000-43664800	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet
37	chr15:43664000-43664800	Enhancers	Sigmoid Colon	Sigmoid Colon
38	chr15:43664000-43664800	Enhancers	Small Intestine	intestine
39	chr15:43664000-43665000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr15:43664000-43665200	Flanking Active TSS	Dnd41	blood
41	chr15:43664000-43668200	Weak transcription	Fetal Stomach	stomach
42	chr15:43664000-43668200	Weak transcription	Gastric	stomach
43	chr15:43664000-43668600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
44	chr15:43664000-43668600	Weak transcription	Left Ventricle	heart
45	chr15:43664000-43669200	Weak transcription	Pancreas	Pancrea
46	chr15:43664000-43670800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr15:43664000-43670800	Weak transcription	Esophagus	oesophagus
48	chr15:43664000-43672000	Weak transcription	Lung	lung
49	chr15:43664000-43672200	Weak transcription	Spleen	Spleen
50	chr15:43664000-43673600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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