Variant report

Variant	rs583606
Chromosome Location	chr11:119860625-119860626
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs595167	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054057	chr11:119781953-120519770	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv541178	chr11:119781953-120519770	Weak transcription Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv832285	chr11:119789595-119957724	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv1037777	chr11:119842515-119898368	Bivalent Enhancer Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv541179	chr11:119842515-119898368	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv1035918	chr11:119853069-119879255	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs583606	ABCG4	cis	parietal	SCAN

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:119854200-119862200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr11:119854400-119860800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr11:119854600-119861800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr11:119855200-119861000	Weak transcription	Fetal Brain Female	brain
5	chr11:119856600-119863000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr11:119858600-119861600	Enhancers	Fetal Heart	heart
7	chr11:119858800-119863200	Enhancers	Brain Cingulate Gyrus	brain
8	chr11:119859000-119863200	Enhancers	Brain Anterior Caudate	brain
9	chr11:119859000-119864400	Enhancers	Brain Angular Gyrus	brain
10	chr11:119859000-119867000	Enhancers	Brain Substantia Nigra	brain
11	chr11:119859000-119867600	Enhancers	Brain Hippocampus Middle	brain
12	chr11:119859000-119867600	Enhancers	Brain Inferior Temporal Lobe	brain
13	chr11:119859200-119862000	Enhancers	Brain Germinal Matrix	brain
14	chr11:119859200-119862000	Enhancers	Fetal Brain Male	brain
15	chr11:119859400-119862600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
16	chr11:119860000-119861000	Weak transcription	Left Ventricle	heart
17	chr11:119860000-119861400	Enhancers	Fetal Muscle Trunk	muscle
18	chr11:119860000-119861600	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
19	chr11:119860200-119860800	Weak transcription	Duodenum Mucosa	Duodenum
20	chr11:119860200-119861600	Enhancers	Ovary	ovary
21	chr11:119860200-119862000	Enhancers	Fetal Lung	lung
22	chr11:119860200-119862400	Enhancers	Right Ventricle	heart
23	chr11:119860400-119861600	Enhancers	Fetal Intestine Small	intestine
24	chr11:119860600-119861400	Enhancers	Fetal Muscle Leg	muscle
25	chr11:119860600-119862000	Enhancers	Spleen	Spleen

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