Variant report

Variant	rs58366864
Chromosome Location	chr3:56433877-56433878
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs1574396	1.00[AMR][1000 genomes]
rs7627677	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876816	chr3:56422771-56457705	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:56424000-56447400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr3:56433200-56434000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr3:56433200-56434000	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr3:56433200-56434200	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr3:56433200-56435000	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr3:56433400-56436400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr3:56433600-56447800	Weak transcription	HUES48 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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