Variant report

Variant	rs58385453
Chromosome Location	chr15:78665974-78665975
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:78639700..78642597-chr15:78664957..78668413,4	MCF-7	breast:
2	chr15:78654127..78657076-chr15:78665731..78668813,3	MCF-7	breast:
3	chr15:78638585..78642502-chr15:78665475..78668779,6	MCF-7	breast:
4	chr15:78661420..78663666-chr15:78664906..78666439,2	MCF-7	breast:
5	chr15:78665803..78668679-chr15:78697732..78701698,4	MCF-7	breast:
6	chr15:78630690..78632557-chr15:78664334..78666586,2	K562	blood:

Variant related genes	Relation type
ENSG00000166426	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529491	chr15:77932659-78751516	Genic enhancers Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
2	nsv917303	chr15:78491050-79205255	Enhancers Genic enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	122 gene(s)	inside rSNPs	diseases
3	nsv833063	chr15:78605215-78754945	Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers Genic enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	nsv1052910	chr15:78608637-78707049	Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	esv3434764	chr15:78665097-78667245	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:78651600-78666600	Weak transcription	Pancreas	Pancrea
2	chr15:78661200-78667200	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr15:78661400-78666400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr15:78664800-78668000	Enhancers	Liver	Liver
5	chr15:78664800-78668200	Enhancers	Fetal Intestine Small	intestine
6	chr15:78665000-78666800	Enhancers	HepG2	liver
7	chr15:78665000-78668200	Enhancers	Fetal Intestine Large	intestine
8	chr15:78665200-78667200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr15:78665400-78666400	Weak transcription	Colonic Mucosa	Colon
10	chr15:78665400-78666400	Weak transcription	Gastric	stomach
11	chr15:78665400-78666600	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr15:78665400-78666800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr15:78665400-78667400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr15:78665400-78673600	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr15:78665400-78673600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr15:78665400-78681400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr15:78665600-78666000	Weak transcription	Duodenum Mucosa	Duodenum
18	chr15:78665600-78666000	Weak transcription	Rectal Mucosa Donor 29	rectum
19	chr15:78665600-78666000	Weak transcription	Rectal Mucosa Donor 31	rectum
20	chr15:78665600-78666000	Weak transcription	Stomach Mucosa	stomach
21	chr15:78665600-78667200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr15:78665800-78666200	Weak transcription	A549	lung
23	chr15:78665800-78666200	Weak transcription	Hela-S3	cervix

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