Variant report

Variant	rs58385622
Chromosome Location	chr6:81882448-81882449
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10223610	1.00[EUR][1000 genomes]
rs56222031	1.00[EUR][1000 genomes]
rs56405808	1.00[EUR][1000 genomes]
rs58992649	1.00[EUR][1000 genomes]
rs60777506	1.00[EUR][1000 genomes]
rs73749059	0.96[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73749062	1.00[AFR][1000 genomes]
rs73749063	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73749065	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73749090	1.00[EUR][1000 genomes]
rs73749092	1.00[EUR][1000 genomes]
rs9294216	1.00[EUR][1000 genomes]
rs9443885	1.00[EUR][1000 genomes]
rs9449280	1.00[EUR][1000 genomes]
rs9449283	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886315	chr6:81352515-81946866	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv886320	chr6:81670720-81960107	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv886321	chr6:81707510-81934605	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv830710	chr6:81727702-81889039	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv830711	chr6:81771575-81937222	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv463936	chr6:81784903-81893325	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv604086	chr6:81784903-81893325	Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv604087	chr6:81792413-82326091	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
9	nsv886327	chr6:81820941-81934605	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv1019897	chr6:81830043-81896664	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:81880200-81882600	Enhancers	Colon Smooth Muscle	Colon
2	chr6:81881400-81882600	Enhancers	Osteobl	bone
3	chr6:81881400-81882800	Enhancers	Muscle Satellite Cultured Cells	--
4	chr6:81881400-81884600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr6:81881800-81882600	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr6:81881800-81882600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
7	chr6:81881800-81882600	Enhancers	HSMMtube	muscle
8	chr6:81882000-81882800	Enhancers	NHDF-Ad	bronchial
9	chr6:81882200-81883800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr6:81882200-81884000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr6:81882400-81884000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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