Variant report

Variant	rs58386816
Chromosome Location	chr10:1205594-1205595
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:98)
CpG islands
(count:122)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:98 , 50 per page) page: 1 2

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	HCFC1	chr10:1205251-1206065	K562	blood:	n/a	n/a
2	SIX5	chr10:1205487-1205869	K562	blood:	n/a	n/a
3	HMGN3	chr10:1205333-1205890	K562	blood:	n/a	n/a
4	TEAD4	chr10:1205355-1205666	K562	blood:	n/a	n/a
5	TBL1XR1	chr10:1205508-1205973	K562	blood:	n/a	n/a
6	POU2F2	chr10:1205394-1206017	GM12891	blood:	n/a	n/a
7	CREB1	chr10:1205183-1206273	K562	blood:	n/a	n/a
8	CHD2	chr10:1205539-1205865	K562	blood:	n/a	n/a
9	E2F6	chr10:1204993-1206036	K562	blood:	n/a	n/a
10	HDAC2	chr10:1205584-1205817	K562	blood:	n/a	n/a
11	CBX3	chr10:1205418-1205999	K562	blood:	n/a	n/a
12	JUND	chr10:1205407-1206006	K562	blood:	n/a	n/a
13	RCOR1	chr10:1205096-1205908	K562	blood:	n/a	n/a
14	MAFK	chr10:1205540-1205805	K562	blood:	n/a	n/a
15	POLR2A	chr10:1205323-1206017	K562	blood:	n/a	n/a
16	CEBPD	chr10:1205409-1205837	K562	blood:	n/a	n/a
17	NFIC	chr10:1205569-1205903	GM12878	blood:	n/a	n/a
18	POLR2A	chr10:1205336-1205937	K562	blood:	n/a	n/a
19	NFATC1	chr10:1205488-1205919	GM12878	blood:	n/a	n/a
20	MAZ	chr10:1205309-1205979	K562	blood:	n/a	n/a
21	SRF	chr10:1205489-1205854	K562	blood:	n/a	n/a
22	MYC	chr10:1205367-1206033	K562	blood:	n/a	n/a
23	YY1	chr10:1205509-1205945	GM12891	blood:	n/a	n/a
24	BCL3	chr10:1205508-1205920	GM12878	blood:	n/a	n/a
25	HEY1	chr10:1205362-1206033	K562	blood:	n/a	n/a
26	CEBPB	chr10:1204919-1205857	K562	blood:	n/a	n/a
27	GTF2F1	chr10:1205438-1205912	K562	blood:	n/a	n/a
28	MYC	chr10:1205528-1206069	K562	blood:	n/a	n/a
29	PAX5	chr10:1205542-1205952	GM12878	blood:	n/a	n/a
30	CCNT2	chr10:1205549-1205923	K562	blood:	n/a	n/a
31	MXI1	chr10:1205566-1206034	K562	blood:	n/a	n/a
32	ELF1	chr10:1205495-1205805	K562	blood:	n/a	n/a
33	JUN	chr10:1205347-1205872	K562	blood:	n/a	n/a
34	POU2F2	chr10:1205441-1205948	GM12891	blood:	n/a	n/a
35	MYC	chr10:1205508-1206026	K562	blood:	n/a	n/a
36	CREB1	chr10:1205207-1206101	K562	blood:	n/a	n/a
37	CEBPB	chr10:1205423-1205778	IMR90	lung:	n/a	n/a
38	MYC	chr10:1205192-1206083	K562	blood:	n/a	chr10:1205297-1205305
39	POLR2A	chr10:1204890-1206048	K562	blood:	n/a	n/a
40	RCOR1	chr10:1205317-1206041	K562	blood:	n/a	n/a
41	MYC	chr10:1205510-1205992	K562	blood:	n/a	n/a
42	NFATC1	chr10:1205473-1205917	GM12878	blood:	n/a	n/a
43	POLR2A	chr10:1205346-1205903	K562	blood:	n/a	n/a
44	MYC	chr10:1204949-1206479	K562	blood:	n/a	chr10:1205297-1205305 chr10:1206291-1206300
45	PML	chr10:1205270-1205951	K562	blood:	n/a	n/a
46	POLR2A	chr10:1205386-1206317	K562	blood:	n/a	n/a
47	POLR2A	chr10:1205150-1206031	K562	blood:	n/a	n/a
48	TCF3	chr10:1205569-1205853	GM12878	blood:	n/a	n/a
49	PML	chr10:1205299-1205683	K562	blood:	n/a	n/a
50	TAF1	chr10:1205349-1205931	K562	blood:	n/a	n/a

(count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr10:1205565-1205615	CMK	blood:	n/a
2	chr10:1205563-1205613	NT2-D1	testis:	n/a
3	chr10:1205565-1205615	MCF-7	breast:	n/a
4	chr10:1205563-1205613	SKMC	muscle:	n/a
5	chr10:1205563-1205613	BE2_C	brain:	n/a
6	chr10:1205563-1205613	NHDF-neo	bronchial:	n/a
7	chr10:1205565-1205615	AG10803	skin:	n/a
8	chr10:1205565-1205615	GM12878	blood:	n/a
9	chr10:1205565-1205615	K562	blood:	n/a
10	chr10:1205565-1205615	T-47D	breast:	n/a
11	chr10:1205563-1205613	GM12892	blood:	n/a
12	chr10:1205563-1205613	AG09309	skin:	n/a
13	chr10:1205565-1205615	PFSK-1	brain:	n/a
14	chr10:1205565-1205615	U87	brain:	n/a
15	chr10:1205565-1205615	AG04450	lung:	fetal
16	chr10:1205563-1205613	HRE	kidney:	n/a
17	chr10:1205565-1205615	AoSMC	blood vessel:	n/a
18	chr10:1205565-1205615	HPAEpiC	pulmonary alveolar:	n/a
19	chr10:1205563-1205613	SK-N-MC	brain:	n/a
20	chr10:1205565-1205615	HCF	heart:	n/a
21	chr10:1205565-1205615	AG09319	gingival:	n/a
22	chr10:1205563-1205613	AoSMC	blood vessel:	n/a
23	chr10:1205565-1205615	HAEpiC	amniotic membrane:	n/a
24	chr10:1205565-1205615	ProgFib	skin:	n/a
25	chr10:1205565-1205615	ovcar-3	ovarian:	n/a
26	chr10:1205565-1205615	SK-N-SH	brain:	n/a
27	chr10:1205563-1205613	LNCaP	prostate:	n/a
28	chr10:1205565-1205615	HCM	heart:	n/a
29	chr10:1205565-1205615	IMR90	lung:	fetal
30	chr10:1205565-1205615	NHBE	bronchial:	n/a
31	chr10:1205563-1205613	NB4	blood:	n/a
32	chr10:1205563-1205613	AG04450	lung:	fetal
33	chr10:1205565-1205615	HCT-116	colon:	n/a
34	chr10:1205563-1205613	HIPEpiC	eye:	n/a
35	chr10:1205565-1205615	AG04449	skin:	fetal
36	chr10:1205565-1205615	NT2-D1	testis:	n/a
37	chr10:1205563-1205613	HL-60	blood:	n/a
38	chr10:1205563-1205613	HCM	heart:	n/a
39	chr10:1205565-1205615	HNPCEpiC	eye:	n/a
40	chr10:1205563-1205613	NH-A	brain:	n/a
41	chr10:1205565-1205615	MCF10A-Er-Src	breast:	n/a
42	chr10:1205565-1205615	HMEC	breast:	n/a
43	chr10:1205565-1205615	GM19239	blood:	n/a
44	chr10:1205563-1205613	K562	blood:	n/a
45	chr10:1205565-1205615	Jurkat	blood:	n/a
46	chr10:1205563-1205613	HPAEpiC	pulmonary alveolar:	n/a
47	chr10:1205563-1205613	Caco-2	colon:	n/a
48	chr10:1205565-1205615	ECC-1	luminal epithelium:	n/a
49	chr10:1205565-1205615	GM12892	blood:	n/a
50	chr10:1205563-1205613	GM06990	blood:	n/a

No data

Variant related genes	Relation type
LINC00200	TF binding region
LINC00200	CpG island

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs55740079	1.00[ASN][1000 genomes]
rs55756538	1.00[ASN][1000 genomes]
rs55758242	1.00[ASN][1000 genomes]
rs55986074	1.00[ASN][1000 genomes]
rs56236097	1.00[ASN][1000 genomes]
rs57224118	1.00[ASN][1000 genomes]
rs58302550	1.00[ASN][1000 genomes]
rs58601779	1.00[ASN][1000 genomes]
rs59497142	1.00[ASN][1000 genomes]
rs59543298	1.00[ASN][1000 genomes]
rs59846544	1.00[ASN][1000 genomes]
rs61178403	1.00[ASN][1000 genomes]
rs61340790	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73588416	1.00[ASN][1000 genomes]
rs74117692	1.00[ASN][1000 genomes]
rs74117698	1.00[ASN][1000 genomes]
rs74117701	1.00[ASN][1000 genomes]
rs74117702	1.00[ASN][1000 genomes]
rs74120028	1.00[ASN][1000 genomes]
rs74120031	1.00[ASN][1000 genomes]
rs74120403	1.00[ASN][1000 genomes]
rs74120406	1.00[ASN][1000 genomes]
rs74120408	1.00[ASN][1000 genomes]
rs74120410	1.00[ASN][1000 genomes]
rs74120412	1.00[ASN][1000 genomes]
rs74120415	1.00[ASN][1000 genomes]
rs74120419	1.00[ASN][1000 genomes]
rs74120426	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:30 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530116	chr10:776548-1401075	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv1052540	chr10:887562-1300134	Strong transcription Weak transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	nsv540407	chr10:887562-1300134	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
4	nsv533861	chr10:945438-1382068	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
5	nsv530117	chr10:945438-1729634	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
6	nsv540408	chr10:955835-1260680	Enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
7	nsv817532	chr10:964660-1885945	Bivalent/Poised TSS Enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
8	nsv1050577	chr10:986723-1277854	Weak transcription Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
9	nsv540409	chr10:986723-1277854	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
10	nsv949405	chr10:1010464-1376105	Weak transcription Active TSS Bivalent/Poised TSS Strong transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
11	nsv894722	chr10:1058837-1274538	Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
12	nsv894723	chr10:1073684-1259485	Enhancers Weak transcription Genic enhancers Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
13	nsv894725	chr10:1110464-1421516	Strong transcription Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
14	nsv1054432	chr10:1115626-1230431	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
15	nsv1041498	chr10:1117200-1760190	Genic enhancers Strong transcription Weak transcription Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
16	nsv894726	chr10:1151620-1216861	Weak transcription Strong transcription Genic enhancers Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
17	nsv1052682	chr10:1162925-1675641	Bivalent/Poised TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
18	nsv466699	chr10:1166400-1351088	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
19	nsv549768	chr10:1166400-1351088	Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
20	nsv1043944	chr10:1168095-1626019	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
21	nsv540411	chr10:1168095-1626019	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
22	nsv894727	chr10:1168267-1224336	Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
23	nsv1045618	chr10:1179519-1537451	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
24	nsv1047911	chr10:1182123-1515126	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
25	nsv894728	chr10:1188270-1259485	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
26	nsv894729	chr10:1188270-1274538	Enhancers Bivalent Enhancer Active TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
27	nsv1041995	chr10:1195214-1286740	Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
28	nsv1046041	chr10:1195214-2189155	Enhancers Bivalent Enhancer Bivalent/Poised TSS Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
29	nsv517780	chr10:1202448-1230968	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
30	nsv1039304	chr10:1203718-1287772	Enhancers Genic enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:1144800-1232600	Weak transcription	Right Atrium	heart
2	chr10:1196800-1206600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr10:1200800-1206600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr10:1204600-1206400	Active TSS	K562	blood
5	chr10:1205000-1205600	Bivalent/Poised TSS	Fetal Stomach	stomach
6	chr10:1205400-1205600	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland
7	chr10:1205400-1205800	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr10:1205400-1206600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links