The 2.0 version of rSNPBase

Variant report

Variant rs58392320
Chromosome Location chr1:179822928-179822929
allele A/C
Outlinks Ensembl   UCSC
Chromatin state (count:125 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:179795600-179834200 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
2 chr1:179802400-179836200 Weak transcription Primary T killer memory cells from peripheral blood blood
3 chr1:179803600-179833600 Weak transcription Fetal Brain Male brain
4 chr1:179807600-179827400 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
5 chr1:179807800-179833800 Weak transcription ES-WA7 Cell Line embryonic stem cell
6 chr1:179808600-179837000 Strong transcription Liver Liver
7 chr1:179808600-179839800 Strong transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
8 chr1:179808800-179836000 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
9 chr1:179809800-179827800 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
10 chr1:179810200-179828000 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
11 chr1:179812200-179827800 Strong transcription Primary Natural Killer cells fromperipheralblood blood
12 chr1:179812600-179842600 Weak transcription Stomach Mucosa stomach
13 chr1:179813200-179823000 Strong transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
14 chr1:179813200-179823400 Strong transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
15 chr1:179813200-179839200 Strong transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
16 chr1:179813400-179825400 Strong transcription Monocytes-CD14+_RO01746 blood
17 chr1:179813400-179834000 Weak transcription iPS-15b Cell Line embryonic stem cell
18 chr1:179814200-179823600 Strong transcription Duodenum Smooth Muscle Duodenum
19 chr1:179814200-179834400 Weak transcription Fetal Heart heart
20 chr1:179814400-179839200 Strong transcription HSMM muscle
21 chr1:179815000-179828400 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
22 chr1:179815000-179839400 Strong transcription IMR90 fetal lung fibroblasts Cell Line lung
23 chr1:179816000-179836000 Weak transcription Colonic Mucosa Colon
24 chr1:179816800-179826400 Weak transcription Colon Smooth Muscle Colon
25 chr1:179820200-179825000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
26 chr1:179820200-179825400 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
27 chr1:179820200-179825600 Weak transcription Fetal Intestine Small intestine
28 chr1:179820200-179825800 Weak transcription Lung lung
29 chr1:179820200-179826200 Weak transcription NHLF lung
30 chr1:179820200-179829600 Weak transcription Pancreatic Islets Pancreatic Islet
31 chr1:179820200-179831600 Weak transcription Esophagus oesophagus
32 chr1:179820200-179834200 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
33 chr1:179820400-179824600 Weak transcription Fetal Lung lung
34 chr1:179820400-179825000 Weak transcription Aorta Aorta
35 chr1:179820400-179825000 Weak transcription Brain Germinal Matrix brain
36 chr1:179820400-179825400 Weak transcription Fetal Brain Female brain
37 chr1:179820400-179825600 Weak transcription Ovary ovary
38 chr1:179820400-179825600 Weak transcription Pancreas Pancrea
39 chr1:179820400-179825600 Weak transcription Spleen Spleen
40 chr1:179820400-179825600 Weak transcription HMEC breast
41 chr1:179820400-179825800 Weak transcription Primary hematopoietic stem cells blood
42 chr1:179820400-179825800 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
43 chr1:179820400-179825800 Weak transcription Gastric stomach
44 chr1:179820400-179826000 Weak transcription Skeletal Muscle Male skeletal muscle
45 chr1:179820400-179826200 Weak transcription Rectal Smooth Muscle rectum
46 chr1:179820400-179826200 Weak transcription Sigmoid Colon Sigmoid Colon
47 chr1:179820400-179826400 Weak transcription Thymus Thymus
48 chr1:179820400-179829200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
49 chr1:179820400-179829800 Weak transcription Psoas Muscle Psoas
50 chr1:179820400-179831600 Weak transcription iPS-18 Cell Line embryonic stem cell

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Last update: Aug 31, 2015