Variant report

Variant	rs58392573
Chromosome Location	chr3:157141678-157141679
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs13083863	0.95[ASN][1000 genomes]
rs35043399	0.95[ASN][1000 genomes]
rs35391186	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757900	chr3:157090166-157254684	Weak transcription Strong transcription Bivalent/Poised TSS Bivalent Enhancer Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	esv2759193	chr3:157090166-157254684	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:157091800-157142600	Weak transcription	Pancreas	Pancrea
2	chr3:157119000-157142800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr3:157120000-157142600	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr3:157127000-157141800	Weak transcription	Primary neutrophils fromperipheralblood	blood
5	chr3:157136000-157142800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr3:157136200-157145800	Weak transcription	NHLF	lung
7	chr3:157136200-157146800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr3:157139000-157154600	Weak transcription	Lung	lung
9	chr3:157139600-157142800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr3:157140800-157141800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr3:157140800-157142000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr3:157141000-157141800	Enhancers	Muscle Satellite Cultured Cells	--
13	chr3:157141000-157141800	Enhancers	HSMM	muscle
14	chr3:157141000-157141800	Enhancers	HUVEC	blood vessel
15	chr3:157141000-157141800	Enhancers	NHDF-Ad	bronchial
16	chr3:157141000-157141800	Enhancers	Osteobl	bone
17	chr3:157141400-157154200	Weak transcription	NH-A	brain
18	chr3:157141600-157143000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr3:157141600-157145400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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