Variant report

Variant	rs58401341
Chromosome Location	chr11:121567863-121567864
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs17125658	1.00[EUR][1000 genomes]
rs17337279	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv975233	chr11:121359656-121574786	Genic enhancers Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:121561000-121570200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr11:121565400-121571000	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr11:121566400-121568800	Enhancers	Fetal Brain Male	brain
4	chr11:121566600-121568200	Enhancers	Fetal Muscle Leg	muscle
5	chr11:121566600-121568200	Enhancers	Fetal Stomach	stomach
6	chr11:121566800-121568000	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr11:121566800-121568000	Enhancers	NH-A	brain
8	chr11:121566800-121568400	Flanking Active TSS	Stomach Smooth Muscle	stomach
9	chr11:121566800-121568600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr11:121566800-121570200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr11:121567000-121568200	Enhancers	Right Ventricle	heart
12	chr11:121567000-121570000	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr11:121567200-121569400	Enhancers	Fetal Heart	heart
14	chr11:121567400-121568200	Active TSS	Duodenum Smooth Muscle	Duodenum
15	chr11:121567400-121570600	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr11:121567600-121568000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr11:121567600-121568000	Enhancers	Skeletal Muscle Male	skeletal muscle
18	chr11:121567600-121568200	Enhancers	Breast Myoepithelial Primary Cells	Breast
19	chr11:121567600-121568200	Enhancers	Colon Smooth Muscle	Colon
20	chr11:121567600-121568200	Enhancers	Left Ventricle	heart
21	chr11:121567600-121568200	Enhancers	Rectal Smooth Muscle	rectum
22	chr11:121567600-121568200	Enhancers	Skeletal Muscle Female	skeletal muscle
23	chr11:121567600-121568800	Enhancers	Brain Angular Gyrus	brain
24	chr11:121567600-121568800	Enhancers	Brain Inferior Temporal Lobe	brain
25	chr11:121567600-121570200	Enhancers	Brain Hippocampus Middle	brain
26	chr11:121567600-121570400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr11:121567600-121570600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr11:121567600-121571600	Weak transcription	Right Atrium	heart
29	chr11:121567600-121572400	Enhancers	Brain Substantia Nigra	brain
30	chr11:121567800-121568000	Flanking Active TSS	Brain Cingulate Gyrus	brain
31	chr11:121567800-121568200	Enhancers	Brain Anterior Caudate	brain
32	chr11:121567800-121568200	Enhancers	Fetal Brain Female	brain
33	chr11:121567800-121568800	Enhancers	Brain Germinal Matrix	brain
34	chr11:121567800-121569000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
35	chr11:121567800-121570400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr11:121567800-121570600	Weak transcription	HUES6 Cell Line	embryonic stem cell

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