Variant report

Variant	rs58404650
Chromosome Location	chr12:47572344-47572345
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:47569457..47573425-chr12:47575157..47580264,4	MCF-7	breast:
2	chr12:47556322..47559512-chr12:47571534..47574931,3	MCF-7	breast:
3	chr12:47571772..47573716-chr12:47578864..47580803,2	MCF-7	breast:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10881059	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11829304	0.89[ASN][1000 genomes]
rs11833039	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11834555	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1949861	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs59082668	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61677310	0.89[ASN][1000 genomes]
rs61927694	0.89[ASN][1000 genomes]
rs61927713	1.00[ASN][1000 genomes]
rs61927714	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61927715	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61927717	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61927718	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv469368	chr12:47374908-47675680	Enhancers Genic enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	nsv558784	chr12:47374908-47675680	Genic enhancers Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
3	nsv832399	chr12:47502910-47689601	Genic enhancers Enhancers Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
4	esv2751100	chr12:47541390-47746157	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:47536000-47578000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr12:47550600-47582400	Weak transcription	Aorta	Aorta
3	chr12:47551200-47583600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr12:47554800-47579600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr12:47555000-47576400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
6	chr12:47557800-47581600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
7	chr12:47558600-47580200	Weak transcription	Primary B cells from cord blood	blood
8	chr12:47558800-47582200	Weak transcription	NH-A	brain
9	chr12:47558800-47582400	Weak transcription	Lung	lung
10	chr12:47559000-47578000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
11	chr12:47559000-47582200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr12:47560200-47578800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
13	chr12:47561400-47578000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr12:47566600-47575600	Weak transcription	A549	lung
15	chr12:47566600-47582400	Weak transcription	HSMM	muscle
16	chr12:47568000-47575800	Weak transcription	Primary B cells from peripheral blood	blood
17	chr12:47568200-47580800	Weak transcription	Primary T helper cells fromperipheralblood	blood
18	chr12:47568800-47575800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr12:47568800-47577800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr12:47570600-47578000	Weak transcription	NHEK	skin
21	chr12:47570600-47582800	Weak transcription	Colon Smooth Muscle	Colon
22	chr12:47570800-47572400	Genic enhancers	Primary T cells fromperipheralblood	blood
23	chr12:47570800-47580200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr12:47571000-47573400	Weak transcription	Stomach Smooth Muscle	stomach
25	chr12:47571000-47578200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
26	chr12:47571200-47581600	Weak transcription	Primary T cells from cord blood	blood
27	chr12:47571600-47572400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
28	chr12:47571800-47572400	Enhancers	Primary T helper cells PMA-I stimulated	--
29	chr12:47572000-47573200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
30	chr12:47572200-47572600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
31	chr12:47572200-47573000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood

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