Variant report

Variant	rs58423501
Chromosome Location	chr9:97181651-97181652
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs2139188	1.00[AMR][1000 genomes]
rs3926702	0.92[AMR][1000 genomes]
rs4596710	1.00[ASN][1000 genomes]
rs58463482	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73653462	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73653464	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893592	chr9:96973995-97295269	Strong transcription ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv1046906	chr9:96999227-97239809	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	esv2761545	chr9:97025298-97356950	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv1041195	chr9:97054795-97402378	Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
5	nsv982324	chr9:97139062-97200156	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:97153800-97182200	Weak transcription	NHEK	skin
2	chr9:97158000-97203200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr9:97160200-97182400	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr9:97160200-97183400	Weak transcription	Monocytes-CD14+_RO01746	blood
5	chr9:97160400-97203600	Weak transcription	Primary B cells from peripheral blood	blood
6	chr9:97164400-97185200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr9:97166400-97206400	Weak transcription	HSMMtube	muscle
8	chr9:97167800-97203600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr9:97169800-97207000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr9:97172000-97186000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
11	chr9:97172000-97203200	Weak transcription	Primary T helper cells PMA-I stimulated	--
12	chr9:97172000-97208400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
13	chr9:97172600-97204200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr9:97172800-97182400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr9:97173200-97184000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr9:97174200-97207000	Weak transcription	Lung	lung
17	chr9:97174400-97183800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr9:97175600-97204200	Weak transcription	Fetal Muscle Trunk	muscle
19	chr9:97175800-97202200	Weak transcription	Dnd41	blood
20	chr9:97176000-97183600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr9:97176000-97203800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr9:97176200-97182200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr9:97176200-97182200	Weak transcription	Skeletal Muscle Female	skeletal muscle
24	chr9:97176200-97184600	Weak transcription	Primary T cells from cord blood	blood
25	chr9:97176200-97192200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
26	chr9:97176200-97194800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
27	chr9:97176200-97195000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr9:97176200-97201000	Weak transcription	Primary T cells fromperipheralblood	blood
29	chr9:97176200-97203200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
30	chr9:97176200-97203600	Weak transcription	Primary hematopoietic stem cells	blood
31	chr9:97176200-97203600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
32	chr9:97176200-97207000	Weak transcription	Left Ventricle	heart
33	chr9:97176400-97183600	Weak transcription	Primary monocytes fromperipheralblood	blood
34	chr9:97176400-97203200	Weak transcription	Rectal Mucosa Donor 29	rectum
35	chr9:97176600-97183600	Weak transcription	Adipose Nuclei	Adipose
36	chr9:97176600-97203400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
37	chr9:97176800-97203200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr9:97176800-97203600	Weak transcription	Duodenum Mucosa	Duodenum
39	chr9:97176800-97218000	Weak transcription	Fetal Brain Female	brain
40	chr9:97177000-97203200	Weak transcription	Osteobl	bone
41	chr9:97177200-97201000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr9:97177200-97201000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
43	chr9:97177200-97203600	Weak transcription	Thymus	Thymus
44	chr9:97177200-97209400	Weak transcription	Cortex derived primary cultured neurospheres	brain
45	chr9:97177400-97201400	Weak transcription	Primary T helper cells fromperipheralblood	blood
46	chr9:97177400-97201400	Weak transcription	Fetal Thymus	thymus
47	chr9:97177400-97206400	Weak transcription	Gastric	stomach
48	chr9:97178000-97184600	Weak transcription	HUES6 Cell Line	embryonic stem cell
49	chr9:97178000-97192400	Weak transcription	Fetal Stomach	stomach
50	chr9:97178000-97203800	Weak transcription	K562	blood

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