Variant report

Variant	rs58433504
Chromosome Location	chr6:149452471-149452472
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:149438403..149440281-chr6:149452330..149454073,2	K562	blood:
2	chr6:149399566..149401649-chr6:149452459..149454867,2	MCF-7	breast:
3	chr6:149445544..149448447-chr6:149451450..149453533,2	K562	blood:
4	chr6:149451723..149453741-chr6:149733693..149735273,2	MCF-7	breast:
5	chr6:149447328..149451282-chr6:149451738..149453433,3	K562	blood:
6	chr6:149452280..149455428-chr6:149458542..149462690,3	MCF-7	breast:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs56061067	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032319	chr6:149271433-149550525	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv538470	chr6:149271433-149550525	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv1024776	chr6:149398652-149654593	Weak transcription Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149447600-149454400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
2	chr6:149447800-149454200	Enhancers	Primary T helper cells fromperipheralblood	blood
3	chr6:149448000-149452600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr6:149448800-149453600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
5	chr6:149448800-149454200	Enhancers	Placenta	Placenta
6	chr6:149449600-149452600	Enhancers	Fetal Lung	lung
7	chr6:149449800-149453600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr6:149449800-149454200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
9	chr6:149449800-149455600	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr6:149450000-149454400	Enhancers	Primary T helper cells PMA-I stimulated	--
11	chr6:149450000-149457000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
12	chr6:149450000-149461200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr6:149450200-149452600	Weak transcription	Gastric	stomach
14	chr6:149450200-149452600	Enhancers	Dnd41	blood
15	chr6:149450200-149453600	Weak transcription	Spleen	Spleen
16	chr6:149450200-149455800	Enhancers	K562	blood
17	chr6:149450200-149461200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr6:149450600-149453000	Enhancers	Stomach Smooth Muscle	stomach
19	chr6:149451000-149453200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr6:149451000-149453200	Weak transcription	Esophagus	oesophagus
21	chr6:149451000-149453600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
22	chr6:149451000-149453600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
23	chr6:149451200-149453200	Weak transcription	Primary T cells fromperipheralblood	blood
24	chr6:149451400-149452800	Enhancers	Fetal Stomach	stomach
25	chr6:149451400-149453800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
26	chr6:149451600-149453400	Weak transcription	GM12878-XiMat	blood
27	chr6:149451600-149455800	Weak transcription	Fetal Kidney	kidney
28	chr6:149451800-149452800	Weak transcription	Placenta Amnion	Placenta Amnion
29	chr6:149451800-149455800	Weak transcription	Adipose Nuclei	Adipose
30	chr6:149452000-149453000	Weak transcription	Primary T cells from cord blood	blood
31	chr6:149452000-149453600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr6:149452000-149453600	Weak transcription	Lung	lung
33	chr6:149452000-149454000	Weak transcription	Fetal Thymus	thymus
34	chr6:149452000-149455000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr6:149452000-149458000	Weak transcription	Pancreas	Pancrea
36	chr6:149452200-149453000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
37	chr6:149452200-149455000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr6:149452400-149452600	Enhancers	Stomach Mucosa	stomach
39	chr6:149452400-149454000	Weak transcription	Primary hematopoietic stem cells	blood
40	chr6:149452400-149454400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood

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