Variant report

Variant	rs58441680
Chromosome Location	chr6:13841066-13841067
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:13813979..13816007-chr6:13839399..13841859,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000050393	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs56787533	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58548280	0.83[AMR][1000 genomes]
rs58864192	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59177919	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59595029	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59928993	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61578549	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6902171	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6902522	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6911761	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6911899	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6912245	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6915720	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6921513	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs6921779	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6934078	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6938952	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6938981	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6939150	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6939346	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6940950	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73723781	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73723782	0.83[AMR][1000 genomes]
rs73723783	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73723784	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73723789	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73723794	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73723795	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3475107	chr6:13834840-13863839	Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	esv3475109	chr6:13835023-13863759	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:13837000-13841600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr6:13837000-13841800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr6:13839200-13847200	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr6:13839200-13847200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr6:13839400-13841600	Weak transcription	Adipose Nuclei	Adipose
6	chr6:13839600-13841600	Weak transcription	K562	blood
7	chr6:13840800-13842200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr6:13841000-13848800	Weak transcription	Fetal Lung	lung

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