Variant report

Variant	rs58466613
Chromosome Location	chr6:110384204-110384205
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs57091111	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs57163709	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73533817	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017642	chr6:110252276-110386453	Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv538417	chr6:110252276-110386453	Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv886535	chr6:110377006-110551463	Strong transcription Genic enhancers Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:110376400-110384600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:110383200-110391000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr6:110383800-110385200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr6:110383800-110385200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr6:110383800-110386000	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
6	chr6:110383800-110386200	Enhancers	Fetal Thymus	thymus
7	chr6:110384000-110385600	Enhancers	Primary T cells from cord blood	blood
8	chr6:110384000-110385800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
9	chr6:110384000-110386000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
10	chr6:110384000-110386800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr6:110384000-110387600	Enhancers	Thymus	Thymus
12	chr6:110384200-110385800	Enhancers	Dnd41	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links