Variant report

Variant	rs58468689
Chromosome Location	chr7:108479099-108479100
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10258705	1.00[EUR][1000 genomes]
rs10953583	1.00[EUR][1000 genomes]
rs12705505	1.00[EUR][1000 genomes]
rs1464836	1.00[EUR][1000 genomes]
rs1464837	1.00[EUR][1000 genomes]
rs1525186	1.00[EUR][1000 genomes]
rs1525188	1.00[EUR][1000 genomes]
rs28399004	1.00[EUR][1000 genomes]
rs4730340	1.00[EUR][1000 genomes]
rs6466255	1.00[EUR][1000 genomes]
rs940717	1.00[EUR][1000 genomes]
rs940718	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817371	chr7:108199882-108649799	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv1031096	chr7:108334543-108596014	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv888945	chr7:108445757-108521842	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:108477200-108480000	Enhancers	Fetal Brain Female	brain
2	chr7:108478200-108479400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr7:108478400-108479200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr7:108478400-108480000	Enhancers	Fetal Brain Male	brain
5	chr7:108479000-108479400	Weak transcription	Colon Smooth Muscle	Colon
6	chr7:108479000-108479800	Weak transcription	Hela-S3	cervix

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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