Variant report

Variant	rs584724
Chromosome Location	chr10:6449286-6449287
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:6240172..6247565-chr10:6441706..6450964,34	MCF-7	breast:
2	chr10:6437383..6440179-chr10:6448797..6450334,2	MCF-7	breast:
3	chr10:6447268..6450081-chr10:6450323..6453408,3	K562	blood:
4	chr10:6241662..6248347-chr10:6438932..6450669,77	MCF-7	breast:

Variant related genes	Relation type
ENSG00000213994	Chromatin interaction
ENSG00000170525	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10906529	0.90[ASN][1000 genomes]
rs11258629	0.90[ASN][1000 genomes]
rs11258672	0.95[ASN][1000 genomes]
rs11258708	0.90[ASN][1000 genomes]
rs11258742	0.90[ASN][1000 genomes]
rs11258747	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.82[MKK][hapmap];0.96[TSI][hapmap];0.90[ASN][1000 genomes]
rs11258943	1.00[CHB][hapmap];0.86[TSI][hapmap]
rs11259097	0.82[CHB][hapmap]
rs12220818	0.82[CHB][hapmap]
rs12411431	0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1537320	0.82[CHB][hapmap]
rs17155549	0.95[ASN][1000 genomes]
rs17372283	1.00[CHB][hapmap];0.89[TSI][hapmap]
rs34157770	0.90[ASN][1000 genomes]
rs494800	0.82[CHB][hapmap]
rs586497	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs586511	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs586527	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs602756	0.90[ASN][1000 genomes]
rs61839082	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs648731	0.90[ASN][1000 genomes]
rs667899	0.90[ASN][1000 genomes]
rs7082071	0.82[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.82[MKK][hapmap];0.96[TSI][hapmap];0.90[ASN][1000 genomes]
rs72781716	0.90[ASN][1000 genomes]
rs7910023	0.90[ASN][1000 genomes]
rs7920162	0.90[ASN][1000 genomes]
rs806399	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042286	chr10:5795129-6578445	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
2	nsv1054044	chr10:6155144-6487217	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv430125	chr10:6322167-6477267	Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv1053440	chr10:6354798-6669469	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
5	esv3357360	chr10:6447346-6451644	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:6443400-6452000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr10:6443800-6451800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr10:6444000-6451200	Weak transcription	Aorta	Aorta
4	chr10:6444000-6451400	Weak transcription	Rectal Smooth Muscle	rectum
5	chr10:6444000-6451600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
6	chr10:6444000-6452000	Weak transcription	Brain Anterior Caudate	brain
7	chr10:6444000-6452000	Weak transcription	Right Ventricle	heart
8	chr10:6444000-6452400	Weak transcription	Right Atrium	heart
9	chr10:6444200-6452000	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr10:6445200-6451000	Weak transcription	Dnd41	blood
11	chr10:6445600-6450800	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr10:6445600-6452000	Weak transcription	Psoas Muscle	Psoas
13	chr10:6446000-6452000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr10:6447800-6449400	Enhancers	Primary T helper cells PMA-I stimulated	--
15	chr10:6447800-6449400	Weak transcription	Pancreas	Pancrea
16	chr10:6448200-6449600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
17	chr10:6448200-6449800	Enhancers	Primary T helper cells fromperipheralblood	blood
18	chr10:6448800-6449400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
19	chr10:6448800-6451400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
20	chr10:6449000-6451200	Weak transcription	Primary T cells fromperipheralblood	blood
21	chr10:6449000-6451600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
22	chr10:6449200-6449400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr10:6449200-6449600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
24	chr10:6449200-6450600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
25	chr10:6449200-6450800	Weak transcription	Thymus	Thymus
26	chr10:6449200-6451200	Weak transcription	Fetal Thymus	thymus
27	chr10:6449200-6451600	Weak transcription	Primary T cells from cord blood	blood
28	chr10:6449200-6451800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
29	chr10:6449200-6451800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
30	chr10:6449200-6451800	Enhancers	Skeletal Muscle Female	skeletal muscle

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