Variant report

Variant	rs58477355
Chromosome Location	chr8:121481980-121481981
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:121481546..121483918-chr8:121486505..121488049,2	MCF-7	breast:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10088602	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10096885	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10101508	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10105605	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12335140	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28569084	0.96[EUR][1000 genomes]
rs4469499	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4538928	0.90[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs57952976	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs61538039	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs61753755	1.00[EUR][1000 genomes]
rs66653049	0.88[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs66711862	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72678248	0.84[EUR][1000 genomes]
rs72678254	0.92[EUR][1000 genomes]
rs72678255	1.00[EUR][1000 genomes]
rs72678264	1.00[EUR][1000 genomes]
rs72678268	1.00[EUR][1000 genomes]
rs72680535	0.84[EUR][1000 genomes]
rs73315147	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9297618	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891420	chr8:121194900-121561369	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv891421	chr8:121292407-121653902	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv1033386	chr8:121369943-121501239	Flanking Active TSS Strong transcription Active TSS Enhancers Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	nsv470235	chr8:121437222-121526747	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
5	nsv519152	chr8:121458457-121571266	Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:98 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:121458000-121510400	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr8:121458200-121483000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr8:121458200-121505200	Weak transcription	Placenta	Placenta
4	chr8:121458400-121482600	Weak transcription	Stomach Smooth Muscle	stomach
5	chr8:121458400-121482800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr8:121458400-121484400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr8:121458400-121484600	Weak transcription	Small Intestine	intestine
8	chr8:121458400-121485400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr8:121458400-121488000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr8:121458400-121490200	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr8:121458400-121501000	Weak transcription	Ovary	ovary
12	chr8:121458600-121482800	Weak transcription	Rectal Smooth Muscle	rectum
13	chr8:121458600-121483400	Weak transcription	Rectal Mucosa Donor 29	rectum
14	chr8:121458600-121484000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
15	chr8:121458600-121484000	Weak transcription	Primary T helper cells PMA-I stimulated	--
16	chr8:121458600-121484000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
17	chr8:121458600-121484200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
18	chr8:121458600-121484400	Weak transcription	Brain Substantia Nigra	brain
19	chr8:121458600-121486200	Weak transcription	Skeletal Muscle Female	skeletal muscle
20	chr8:121458600-121487200	Weak transcription	Fetal Brain Female	brain
21	chr8:121458600-121504200	Weak transcription	Duodenum Mucosa	Duodenum
22	chr8:121458600-121516400	Weak transcription	Duodenum Smooth Muscle	Duodenum
23	chr8:121458800-121483200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr8:121458800-121484000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
25	chr8:121458800-121484800	Weak transcription	Adipose Nuclei	Adipose
26	chr8:121458800-121489000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
27	chr8:121458800-121491000	Weak transcription	HMEC	breast
28	chr8:121458800-121504000	Weak transcription	Fetal Heart	heart
29	chr8:121458800-121510200	Weak transcription	Brain Germinal Matrix	brain
30	chr8:121458800-121510400	Weak transcription	NHLF	lung
31	chr8:121458800-121539000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr8:121459000-121485600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr8:121459000-121485600	Weak transcription	K562	blood
34	chr8:121459000-121486000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr8:121459000-121528600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr8:121459600-121482800	Weak transcription	A549	lung
37	chr8:121459600-121484800	Weak transcription	GM12878-XiMat	blood
38	chr8:121461000-121491000	Weak transcription	Primary hematopoietic stem cells	blood
39	chr8:121464800-121483000	Weak transcription	Fetal Kidney	kidney
40	chr8:121467000-121484400	Weak transcription	HepG2	liver
41	chr8:121467000-121488000	Weak transcription	HSMM	muscle
42	chr8:121468600-121482000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
43	chr8:121468600-121501800	Weak transcription	HUVEC	blood vessel
44	chr8:121469200-121515200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
45	chr8:121470000-121482600	Weak transcription	Hela-S3	cervix
46	chr8:121470000-121502400	Weak transcription	Rectal Mucosa Donor 31	rectum
47	chr8:121470400-121491000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
48	chr8:121470600-121484200	Weak transcription	Primary B cells from peripheral blood	blood
49	chr8:121470600-121490400	Weak transcription	Liver	Liver
50	chr8:121470800-121484000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links