Variant report

Variant	rs58477435
Chromosome Location	chr21:46205356-46205357
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr21:46204523..46207372-chr21:46207396..46209187,2	MCF-7	breast:
2	chr21:46197791..46202676-chr21:46204066..46207240,6	MCF-7	breast:
3	chr21:46204645..46207342-chr21:46215204..46218349,3	K562	blood:
4	chr21:46194639..46196817-chr21:46205284..46207754,2	K562	blood:
5	chr21:46205065..46208052-chr21:46221302..46222914,2	K562	blood:
6	chr21:46184069..46185902-chr21:46205323..46207249,2	MCF-7	breast:
7	chr21:46202815..46206353-chr21:46211210..46215151,6	K562	blood:
8	chr21:46204105..46208556-chr21:46233916..46237563,3	K562	blood:
9	chr21:46191384..46193561-chr21:46204245..46206400,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000184787	Chromatin interaction
ENSG00000236519	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10483079	0.90[AFR][1000 genomes]
rs17004492	0.90[AFR][1000 genomes]
rs73906919	0.95[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916258	chr21:45995986-46624705	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	102 gene(s)	inside rSNPs	diseases
2	nsv913956	chr21:46096964-46279505	Enhancers Bivalent Enhancer Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
3	nsv1062245	chr21:46096964-46332587	Active TSS Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
4	nsv544478	chr21:46096964-46332587	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Weak transcription Bivalent/Poised TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:46187000-46213000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr21:46187800-46206200	Strong transcription	Fetal Thymus	thymus
3	chr21:46188000-46208000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
4	chr21:46188600-46208000	Strong transcription	Monocytes-CD14+_RO01746	blood
5	chr21:46189000-46221000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr21:46189600-46207800	Strong transcription	Dnd41	blood
7	chr21:46190800-46209600	Weak transcription	Fetal Brain Male	brain
8	chr21:46193400-46212600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr21:46193800-46206000	Weak transcription	Brain Hippocampus Middle	brain
10	chr21:46193800-46212800	Weak transcription	Psoas Muscle	Psoas
11	chr21:46195000-46211200	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr21:46195000-46212600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr21:46195000-46219800	Weak transcription	Small Intestine	intestine
14	chr21:46195400-46220400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr21:46195600-46211400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr21:46196000-46205600	Weak transcription	Brain Anterior Caudate	brain
17	chr21:46196000-46211800	Weak transcription	NHLF	lung
18	chr21:46197200-46213000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr21:46197200-46220400	Weak transcription	Primary neutrophils fromperipheralblood	blood
20	chr21:46197400-46212800	Weak transcription	Brain Cingulate Gyrus	brain
21	chr21:46198000-46207200	Weak transcription	NH-A	brain
22	chr21:46198400-46207200	Weak transcription	Rectal Mucosa Donor 31	rectum
23	chr21:46198600-46212000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
24	chr21:46198800-46208000	Strong transcription	K562	blood
25	chr21:46198800-46211400	Weak transcription	HUVEC	blood vessel
26	chr21:46198800-46213000	Weak transcription	Brain Angular Gyrus	brain
27	chr21:46198800-46219600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
28	chr21:46198800-46220000	Weak transcription	H9 Cell Line	embryonic stem cell
29	chr21:46198800-46220000	Weak transcription	Fetal Kidney	kidney
30	chr21:46199200-46207000	Weak transcription	Osteobl	bone
31	chr21:46199800-46209400	Weak transcription	NHDF-Ad	bronchial
32	chr21:46200000-46220400	Weak transcription	Placenta Amnion	Placenta Amnion
33	chr21:46200400-46212800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
34	chr21:46200400-46218200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr21:46200600-46212800	Weak transcription	Colon Smooth Muscle	Colon
36	chr21:46200800-46207800	Strong transcription	Primary T cells from cord blood	blood
37	chr21:46201000-46205600	Weak transcription	Fetal Heart	heart
38	chr21:46201200-46220400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
39	chr21:46201400-46205600	Weak transcription	Stomach Mucosa	stomach
40	chr21:46201400-46207200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr21:46201400-46211200	Weak transcription	Colonic Mucosa	Colon
42	chr21:46201600-46205400	Weak transcription	Fetal Lung	lung
43	chr21:46201600-46206000	Weak transcription	Pancreas	Pancrea
44	chr21:46201600-46212600	Weak transcription	Gastric	stomach
45	chr21:46201600-46212800	Weak transcription	Right Atrium	heart
46	chr21:46201600-46212800	Weak transcription	Sigmoid Colon	Sigmoid Colon
47	chr21:46202200-46206000	Strong transcription	A549	lung
48	chr21:46202200-46208000	Strong transcription	Primary T helper cells fromperipheralblood	blood
49	chr21:46202400-46206200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
50	chr21:46202400-46206800	Strong transcription	Primary T helper cells PMA-I stimulated	--

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