Variant report

Variant	rs58478896
Chromosome Location	chr13:53525741-53525742
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs1075693	0.81[EUR][1000 genomes]
rs1077506	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17052924	0.87[EUR][1000 genomes]
rs2018272	0.87[EUR][1000 genomes]
rs732949	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530719	chr13:53173014-53675953	Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	esv3440613	chr13:53307609-53671072	Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv832613	chr13:53524319-53687188	Enhancers Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:53521800-53526000	Enhancers	iPS-15b Cell Line	embryonic stem cell
2	chr13:53522800-53527000	Weak transcription	Dnd41	blood
3	chr13:53522800-53529000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr13:53523200-53527600	Enhancers	iPS-20b Cell Line	embryonic stem cell
5	chr13:53523600-53526400	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr13:53524200-53525800	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr13:53524200-53526000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr13:53524200-53526000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr13:53524200-53526200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr13:53524200-53528400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr13:53524200-53528600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr13:53524400-53526400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr13:53524400-53527000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr13:53524600-53529800	Weak transcription	Brain Anterior Caudate	brain
15	chr13:53524800-53526800	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr13:53525000-53526200	Enhancers	HUES64 Cell Line	embryonic stem cell
17	chr13:53525200-53527400	Enhancers	ES-I3 Cell Line	embryonic stem cell
18	chr13:53525400-53525800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
19	chr13:53525400-53526200	Enhancers	iPS-18 Cell Line	embryonic stem cell
20	chr13:53525400-53529600	Weak transcription	Primary monocytes fromperipheralblood	blood
21	chr13:53525600-53526800	Enhancers	HUES48 Cell Line	embryonic stem cell
22	chr13:53525600-53529600	Weak transcription	Primary neutrophils fromperipheralblood	blood

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