The 2.0 version of rSNPBase

Variant report

Variant rs58480859
Chromosome Location chr3:133865278-133865279
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:83 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:133842000-133872600 Weak transcription Skeletal Muscle Female skeletal muscle
2 chr3:133842600-133870600 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
3 chr3:133842800-133872000 Weak transcription Duodenum Smooth Muscle Duodenum
4 chr3:133843000-133871200 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
5 chr3:133843000-133872600 Weak transcription Gastric stomach
6 chr3:133848400-133866400 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
7 chr3:133848400-133867400 Weak transcription Primary T cells from cord blood blood
8 chr3:133848600-133865400 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
9 chr3:133848600-133867600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
10 chr3:133848600-133872600 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
11 chr3:133852000-133866000 Weak transcription Stomach Smooth Muscle stomach
12 chr3:133853600-133870600 Weak transcription Duodenum Mucosa Duodenum
13 chr3:133853600-133871000 Weak transcription Sigmoid Colon Sigmoid Colon
14 chr3:133853800-133867400 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
15 chr3:133854400-133872400 Weak transcription NHEK skin
16 chr3:133855400-133871000 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
17 chr3:133856400-133872600 Weak transcription Brain Inferior Temporal Lobe brain
18 chr3:133858000-133870800 Weak transcription Fetal Brain Female brain
19 chr3:133858000-133871800 Weak transcription Primary T helper naive cells fromperipheralblood blood
20 chr3:133859200-133865800 Weak transcription Esophagus oesophagus
21 chr3:133859200-133866000 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
22 chr3:133859400-133871200 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
23 chr3:133859400-133872600 Weak transcription Aorta Aorta
24 chr3:133861000-133867800 Weak transcription Breast Myoepithelial Primary Cells Breast
25 chr3:133862200-133870600 Weak transcription Brain Anterior Caudate brain
26 chr3:133862600-133869400 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
27 chr3:133862600-133870400 Weak transcription Dnd41 blood
28 chr3:133862600-133873600 Weak transcription Primary T regulatory cells fromperipheralblood blood
29 chr3:133862600-133873600 Weak transcription Fetal Heart heart
30 chr3:133862800-133865400 Enhancers Lung lung
31 chr3:133862800-133866200 Enhancers Fetal Muscle Trunk muscle
32 chr3:133862800-133866200 Enhancers Fetal Muscle Leg muscle
33 chr3:133862800-133872600 Weak transcription NH-A brain
34 chr3:133862800-133876800 Weak transcription Small Intestine intestine
35 chr3:133863000-133870400 Weak transcription Rectal Mucosa Donor 29 rectum
36 chr3:133863000-133872400 Weak transcription Primary T cells fromperipheralblood blood
37 chr3:133863000-133872400 Weak transcription Primary T helper cells PMA-I stimulated --
38 chr3:133863000-133876800 Weak transcription H9 Cell Line embryonic stem cell
39 chr3:133863000-133876800 Weak transcription Brain Angular Gyrus brain
40 chr3:133863000-133902200 Weak transcription GM12878-XiMat blood
41 chr3:133863200-133868600 Weak transcription Fetal Lung lung
42 chr3:133863200-133870000 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
43 chr3:133863200-133871200 Weak transcription Primary mononuclear cells fromperipheralblood Blood
44 chr3:133863200-133872200 Weak transcription HepG2 liver
45 chr3:133863200-133872800 Weak transcription NHLF lung
46 chr3:133863200-133877000 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
47 chr3:133863200-133877400 Weak transcription Psoas Muscle Psoas
48 chr3:133863400-133868200 Strong transcription H1 Derived Mesenchymal Stem Cells ES cell derived
49 chr3:133863600-133866200 Enhancers H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
50 chr3:133863600-133873000 Weak transcription Brain Germinal Matrix brain

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Last update: Aug 31, 2015