Variant report

Variant	rs58482230
Chromosome Location	chr20:24401162-24401163
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs55676622	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61091001	1.00[AMR][1000 genomes]
rs73901837	0.87[AMR][1000 genomes]
rs73904204	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73904209	1.00[AMR][1000 genomes]
rs8124247	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv9793	chr20:23939613-24734850	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1058146	chr20:24210196-24531087	Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv833946	chr20:24320375-24490702	Enhancers Bivalent Enhancer Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:24399600-24401600	Enhancers	Brain Inferior Temporal Lobe	brain
2	chr20:24400000-24401400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr20:24400200-24401200	Weak transcription	Brain Anterior Caudate	brain
4	chr20:24400200-24403200	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr20:24400400-24404200	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr20:24400800-24401600	Enhancers	Brain Hippocampus Middle	brain
7	chr20:24400800-24402000	Enhancers	Brain Substantia Nigra	brain
8	chr20:24401000-24401200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr20:24401000-24401600	Enhancers	Brain Cingulate Gyrus	brain
10	chr20:24401000-24401600	Enhancers	Brain Germinal Matrix	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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