Variant report

Variant	rs58487380
Chromosome Location	chr16:31895713-31895714
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:31886296..31887801-chr16:31893665..31896214,2	MCF-7	breast:
2	chr16:31888939..31890909-chr16:31894661..31896622,2	MCF-7	breast:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs56984047	1.00[AFR][1000 genomes]
rs57664662	0.93[AFR][1000 genomes]
rs58641712	0.93[AFR][1000 genomes]
rs59378014	0.93[AFR][1000 genomes]
rs61394714	0.93[AFR][1000 genomes]
rs952006	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1067321	chr16:31652036-31959992	Enhancers ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
2	nsv918074	chr16:31669781-31935033	ZNF genes & repeats Weak transcription Genic enhancers Enhancers Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
3	nsv1063037	chr16:31669981-31934894	Enhancers Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
4	nsv542903	chr16:31669981-31934894	Flanking Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
5	nsv1066522	chr16:31831196-31959992	ZNF genes & repeats Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
6	nsv1057300	chr16:31862900-31959992	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:31886800-31897600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr16:31886800-31898200	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr16:31886800-31901000	Weak transcription	Fetal Brain Male	brain
4	chr16:31887000-31901600	Weak transcription	Fetal Brain Female	brain
5	chr16:31887000-31902200	ZNF genes & repeats	A549	lung
6	chr16:31887200-31900800	Weak transcription	Brain Germinal Matrix	brain
7	chr16:31887400-31900800	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr16:31887800-31895800	Weak transcription	Fetal Lung	lung
9	chr16:31887800-31907400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr16:31888400-31895800	Weak transcription	Fetal Thymus	thymus
11	chr16:31889200-31895800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr16:31889400-31911600	ZNF genes & repeats	Primary B cells from cord blood	blood
13	chr16:31889600-31897600	Weak transcription	Brain Cingulate Gyrus	brain
14	chr16:31889800-31896400	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr16:31890000-31895800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
16	chr16:31890000-31896400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr16:31890000-31896600	Weak transcription	Aorta	Aorta
18	chr16:31890000-31896600	Weak transcription	Colonic Mucosa	Colon
19	chr16:31890000-31897600	Strong transcription	Fetal Intestine Large	intestine
20	chr16:31890200-31895800	Weak transcription	Thymus	Thymus
21	chr16:31890200-31896400	Weak transcription	H1 Cell Line	embryonic stem cell
22	chr16:31890200-31896400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr16:31890200-31897600	Weak transcription	Fetal Muscle Trunk	muscle
24	chr16:31890200-31905800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr16:31891800-31901800	Weak transcription	Brain Inferior Temporal Lobe	brain
26	chr16:31892000-31897200	Weak transcription	Brain Angular Gyrus	brain
27	chr16:31892000-31900800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
28	chr16:31892000-31905000	Weak transcription	H9 Cell Line	embryonic stem cell
29	chr16:31892000-31910400	ZNF genes & repeats	GM12878-XiMat	blood
30	chr16:31892200-31895800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
31	chr16:31892200-31896600	Weak transcription	Brain Hippocampus Middle	brain
32	chr16:31892200-31896600	Weak transcription	Fetal Muscle Leg	muscle
33	chr16:31892200-31896600	Weak transcription	Gastric	stomach
34	chr16:31892200-31896800	Weak transcription	Skeletal Muscle Female	skeletal muscle
35	chr16:31892200-31898800	Strong transcription	Dnd41	blood
36	chr16:31892200-31900800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
37	chr16:31892200-31901600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr16:31892200-31905000	Weak transcription	Fetal Heart	heart
39	chr16:31892400-31895800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
40	chr16:31892400-31895800	Weak transcription	NHDF-Ad	bronchial
41	chr16:31892400-31896000	Genic enhancers	Primary T helper 17 cells PMA-I stimulated	--
42	chr16:31892400-31896400	Weak transcription	Placenta	Placenta
43	chr16:31892400-31896400	Weak transcription	Fetal Stomach	stomach
44	chr16:31892400-31896400	Weak transcription	NHLF	lung
45	chr16:31892400-31896600	Weak transcription	Adipose Nuclei	Adipose
46	chr16:31892400-31897400	Weak transcription	Rectal Smooth Muscle	rectum
47	chr16:31892400-31899600	Genic enhancers	Primary T helper cells PMA-I stimulated	--
48	chr16:31892400-31903400	Weak transcription	Skeletal Muscle Male	skeletal muscle
49	chr16:31892400-31904200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chr16:31892400-31905000	Weak transcription	Brain Substantia Nigra	brain

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