Variant report

Variant	rs58498078
Chromosome Location	chr15:78700496-78700497
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:78665803..78668679-chr15:78697732..78701698,4	MCF-7	breast:
2	chr15:78690617..78693319-chr15:78700290..78702195,2	MCF-7	breast:
3	chr15:78699345..78701033-chr15:78728598..78731908,3	K562	blood:

Variant related genes	Relation type
ENSG00000136381	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs12907636	0.86[AFR][1000 genomes]
rs12911913	0.89[AFR][1000 genomes]
rs35507142	0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3743086	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8027418	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs8036991	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529491	chr15:77932659-78751516	Genic enhancers Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
2	nsv917303	chr15:78491050-79205255	Enhancers Genic enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	122 gene(s)	inside rSNPs	diseases
3	nsv833063	chr15:78605215-78754945	Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers Genic enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	nsv1052910	chr15:78608637-78707049	Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	nsv1627	chr15:78683761-78728604	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:78667600-78704400	Weak transcription	Lung	lung
2	chr15:78688000-78703800	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr15:78692400-78705200	Weak transcription	Spleen	Spleen
4	chr15:78697800-78701600	Weak transcription	Right Atrium	heart
5	chr15:78698200-78729800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr15:78698800-78701600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr15:78698800-78701800	Enhancers	Rectal Mucosa Donor 31	rectum
8	chr15:78699000-78701600	Enhancers	HMEC	breast
9	chr15:78699000-78701800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr15:78699000-78701800	Enhancers	Sigmoid Colon	Sigmoid Colon
11	chr15:78699200-78702000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr15:78699400-78700600	Weak transcription	Gastric	stomach
13	chr15:78699800-78701800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr15:78699800-78701800	Enhancers	NHEK	skin
15	chr15:78699800-78702000	Enhancers	Rectal Mucosa Donor 29	rectum
16	chr15:78700000-78700800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr15:78700000-78701400	Enhancers	NHDF-Ad	bronchial
18	chr15:78700000-78701600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr15:78700200-78700800	Enhancers	Fetal Stomach	stomach
20	chr15:78700400-78700600	Enhancers	Colonic Mucosa	Colon
21	chr15:78700400-78706400	Weak transcription	Duodenum Mucosa	Duodenum

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