Variant report

Variant	rs58503015
Chromosome Location	chr17:60173940-60173941
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:60164468..60167982-chr17:60172578..60174977,3	K562	blood:
2	chr17:60171034..60173944-chr17:60180314..60182987,2	MCF-7	breast:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs56887241	1.00[AMR][1000 genomes]
rs58664010	1.00[AMR][1000 genomes]
rs59694093	1.00[AMR][1000 genomes]
rs60469437	1.00[AMR][1000 genomes]
rs73338431	1.00[AMR][1000 genomes]
rs73338437	1.00[AMR][1000 genomes]
rs73338439	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062816	chr17:60074670-60470465	Strong transcription Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
2	esv2753884	chr17:60077852-60190630	Strong transcription Active TSS Weak transcription Transcr. at gene 5' and 3' Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	esv2755037	chr17:60086508-60386211	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
4	esv3415630	chr17:60124819-60401635	Enhancers Genic enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:60170200-60174000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr17:60170200-60174000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr17:60170200-60174000	Enhancers	HMEC	breast
4	chr17:60171000-60175800	Weak transcription	K562	blood
5	chr17:60171600-60175000	Weak transcription	Primary B cells from peripheral blood	blood
6	chr17:60171800-60174000	Enhancers	Liver	Liver
7	chr17:60171800-60175200	Weak transcription	Fetal Intestine Small	intestine
8	chr17:60171800-60175600	Weak transcription	Small Intestine	intestine
9	chr17:60171800-60176200	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr17:60172000-60174000	Enhancers	HepG2	liver
11	chr17:60172000-60175400	Weak transcription	Duodenum Mucosa	Duodenum
12	chr17:60172000-60175600	Enhancers	GM12878-XiMat	blood
13	chr17:60172000-60176400	Weak transcription	Pancreas	Pancrea
14	chr17:60172600-60174000	Enhancers	Breast Myoepithelial Primary Cells	Breast
15	chr17:60173000-60174000	Enhancers	NHDF-Ad	bronchial
16	chr17:60173200-60174000	Enhancers	Aorta	Aorta
17	chr17:60173400-60174000	Enhancers	HSMM	muscle
18	chr17:60173400-60174000	Enhancers	HSMMtube	muscle
19	chr17:60173400-60174000	Flanking Active TSS	NH-A	brain
20	chr17:60173600-60174000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr17:60173800-60174000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr17:60173800-60174000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr17:60173800-60174200	Enhancers	Osteobl	bone

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