Variant report

Variant	rs58504448
Chromosome Location	chr1:217358032-217358033
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs17698444	0.89[ASN][1000 genomes]
rs58726682	0.93[ASN][1000 genomes]
rs61819276	1.00[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs61819278	0.96[ASN][1000 genomes]
rs61819285	0.93[ASN][1000 genomes]
rs61819292	0.93[ASN][1000 genomes]
rs6665336	0.93[ASN][1000 genomes]
rs6677266	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv549207	chr1:217333272-217455903	Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1003559	chr1:217354095-217418732	Enhancers Weak transcription	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:217354000-217359000	Enhancers	Fetal Heart	heart
2	chr1:217357800-217358400	Enhancers	Adipose Nuclei	Adipose
3	chr1:217357800-217359000	Enhancers	Breast Myoepithelial Primary Cells	Breast

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links