Variant report

Variant	rs58507114
Chromosome Location	chr17:15336280-15336281
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:15336028..15339604-chr17:15340732..15344968,3	MCF-7	breast:
2	chr17:15305336..15307467-chr17:15334554..15337219,2	K562	blood:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs3886590	1.00[AMR][1000 genomes]
rs57545907	1.00[AMR][1000 genomes]
rs59195607	1.00[AMR][1000 genomes]
rs7209393	1.00[AMR][1000 genomes]
rs73287752	1.00[AMR][1000 genomes]
rs73287780	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492304	chr17:15043353-15611753	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	nsv916652	chr17:15093600-15856310	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
3	nsv427990	chr17:15154329-15434020	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
4	nsv907703	chr17:15199907-15370701	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
5	nsv949172	chr17:15206970-15416808	Active TSS Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
6	nsv1055677	chr17:15294011-15561130	Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
7	nsv1059056	chr17:15294011-15856861	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
8	nsv1058286	chr17:15315763-15561130	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
9	nsv543213	chr17:15315763-15561130	Weak transcription Enhancers Genic enhancers Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:15326000-15340200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr17:15326200-15336800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr17:15326400-15340600	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr17:15326600-15340200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr17:15328800-15339600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr17:15329000-15339400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr17:15329800-15340000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr17:15330200-15336600	Weak transcription	Fetal Heart	heart
9	chr17:15331000-15339400	Weak transcription	Esophagus	oesophagus
10	chr17:15332800-15340400	Enhancers	Fetal Muscle Leg	muscle
11	chr17:15333000-15340600	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr17:15333000-15340600	Weak transcription	Aorta	Aorta
13	chr17:15333000-15340600	Weak transcription	Thymus	Thymus
14	chr17:15333200-15339000	Enhancers	Fetal Muscle Trunk	muscle
15	chr17:15333400-15337400	Enhancers	Skeletal Muscle Female	skeletal muscle
16	chr17:15333400-15340400	Enhancers	Fetal Stomach	stomach
17	chr17:15333600-15361000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr17:15334200-15339600	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chr17:15334400-15338200	Enhancers	Skeletal Muscle Male	skeletal muscle
20	chr17:15334600-15336400	Enhancers	HepG2	liver
21	chr17:15334600-15336800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr17:15334600-15339200	Weak transcription	Brain Substantia Nigra	brain
23	chr17:15334600-15339400	Weak transcription	Brain Inferior Temporal Lobe	brain
24	chr17:15335000-15338000	Weak transcription	Fetal Brain Female	brain
25	chr17:15335000-15339400	Weak transcription	Brain Angular Gyrus	brain
26	chr17:15335000-15339400	Weak transcription	Brain Anterior Caudate	brain
27	chr17:15335000-15339400	Weak transcription	Rectal Mucosa Donor 29	rectum
28	chr17:15335000-15339600	Weak transcription	Brain Cingulate Gyrus	brain
29	chr17:15335200-15336400	Weak transcription	Brain Hippocampus Middle	brain
30	chr17:15335200-15336400	Weak transcription	Rectal Mucosa Donor 31	rectum
31	chr17:15335200-15338200	Weak transcription	HSMM	muscle
32	chr17:15335200-15339600	Weak transcription	Muscle Satellite Cultured Cells	--
33	chr17:15335400-15336400	Enhancers	Psoas Muscle	Psoas
34	chr17:15335400-15336400	Weak transcription	HSMMtube	muscle
35	chr17:15335400-15336800	Weak transcription	Rectal Smooth Muscle	rectum
36	chr17:15335400-15337000	Enhancers	Liver	Liver
37	chr17:15335400-15337400	Weak transcription	Stomach Smooth Muscle	stomach
38	chr17:15335400-15339400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr17:15335400-15340400	Enhancers	Placenta	Placenta
40	chr17:15335400-15343000	Enhancers	Fetal Intestine Large	intestine
41	chr17:15335600-15336600	Weak transcription	Colon Smooth Muscle	Colon
42	chr17:15335600-15338000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr17:15335600-15340400	Enhancers	Fetal Intestine Small	intestine
44	chr17:15335600-15348000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
45	chr17:15335800-15338200	Enhancers	Duodenum Mucosa	Duodenum
46	chr17:15335800-15338400	Enhancers	Small Intestine	intestine
47	chr17:15335800-15339800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr17:15335800-15340600	Enhancers	Fetal Lung	lung
49	chr17:15336000-15337800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr17:15336000-15338200	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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