Variant report

Variant	rs58511507
Chromosome Location	chr15:59546673-59546674
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs59782447	1.00[AFR][1000 genomes]
rs73420814	1.00[AFR][1000 genomes]
rs73422983	1.00[AFR][1000 genomes]
rs73424956	1.00[AMR][1000 genomes]
rs73424963	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527307	chr15:59103328-60018487	Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	145 gene(s)	inside rSNPs	diseases
2	nsv833027	chr15:59474806-59608544	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv904272	chr15:59500577-59549018	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	nsv904273	chr15:59518488-59567137	Weak transcription Enhancers Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:87 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:59511400-59549200	Weak transcription	Colonic Mucosa	Colon
2	chr15:59515800-59566600	Weak transcription	Pancreas	Pancrea
3	chr15:59517800-59564200	Weak transcription	Fetal Muscle Trunk	muscle
4	chr15:59521600-59566400	Weak transcription	Psoas Muscle	Psoas
5	chr15:59524600-59569200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr15:59524600-59574600	Weak transcription	Lung	lung
7	chr15:59525200-59547800	Weak transcription	Colon Smooth Muscle	Colon
8	chr15:59525200-59554000	Weak transcription	Rectal Smooth Muscle	rectum
9	chr15:59525200-59566600	Weak transcription	Small Intestine	intestine
10	chr15:59525200-59582000	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr15:59529200-59547200	Weak transcription	Aorta	Aorta
12	chr15:59529200-59547800	Weak transcription	Duodenum Mucosa	Duodenum
13	chr15:59530200-59548000	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr15:59530600-59558200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
15	chr15:59530600-59568000	Weak transcription	H1 Cell Line	embryonic stem cell
16	chr15:59530800-59549400	Weak transcription	Primary monocytes fromperipheralblood	blood
17	chr15:59530800-59569000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
18	chr15:59533400-59559800	Weak transcription	NHLF	lung
19	chr15:59533400-59564000	Weak transcription	Ovary	ovary
20	chr15:59533400-59566800	Weak transcription	Skeletal Muscle Female	skeletal muscle
21	chr15:59534400-59547800	Genic enhancers	A549	lung
22	chr15:59536000-59547800	Genic enhancers	Hela-S3	cervix
23	chr15:59536200-59548000	Weak transcription	Stomach Mucosa	stomach
24	chr15:59536600-59559000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr15:59537000-59547800	Weak transcription	HSMMtube	muscle
26	chr15:59540000-59551200	Weak transcription	Brain Inferior Temporal Lobe	brain
27	chr15:59540000-59560000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
28	chr15:59540000-59568800	Weak transcription	Fetal Kidney	kidney
29	chr15:59540200-59548000	Weak transcription	Fetal Heart	heart
30	chr15:59540200-59549400	Weak transcription	HUVEC	blood vessel
31	chr15:59540400-59552600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
32	chr15:59540600-59561400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr15:59541000-59554000	Weak transcription	Right Ventricle	heart
34	chr15:59541000-59558000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
35	chr15:59541200-59549400	Weak transcription	Adipose Nuclei	Adipose
36	chr15:59541200-59566400	Weak transcription	H9 Cell Line	embryonic stem cell
37	chr15:59542000-59548400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
38	chr15:59542200-59550600	Weak transcription	Brain Cingulate Gyrus	brain
39	chr15:59542400-59547400	Weak transcription	Placenta	Placenta
40	chr15:59542400-59547800	Weak transcription	Placenta Amnion	Placenta Amnion
41	chr15:59542400-59551600	Weak transcription	Cortex derived primary cultured neurospheres	brain
42	chr15:59542400-59568200	Weak transcription	Gastric	stomach
43	chr15:59542600-59547200	Weak transcription	Fetal Stomach	stomach
44	chr15:59542600-59547800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr15:59542600-59549400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr15:59542600-59559800	Weak transcription	Spleen	Spleen
47	chr15:59542600-59563000	Weak transcription	Skeletal Muscle Male	skeletal muscle
48	chr15:59542800-59565400	Weak transcription	Left Ventricle	heart
49	chr15:59543200-59548800	Weak transcription	Esophagus	oesophagus
50	chr15:59543200-59552400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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