Variant report

Variant	rs58512228
Chromosome Location	chr8:110593657-110593658
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOXA1	chr8:110593256-110593706	A549	lung:	n/a	n/a
2	NR3C1	chr8:110593244-110593657	A549	lung:	n/a	n/a
3	NR3C1	chr8:110593210-110593706	A549	lung:	n/a	n/a
4	FOS	chr8:110593356-110593682	MCF10A-Er-Src	breast:	n/a	n/a
5	NR3C1	chr8:110593112-110593678	A549	lung:	n/a	n/a
6	FOS	chr8:110593342-110593666	MCF10A-Er-Src	breast:	n/a	n/a
7	NR3C1	chr8:110593182-110593659	A549	lung:	n/a	n/a
8	FOS	chr8:110593325-110593659	MCF10A-Er-Src	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:94546497..94548922-chr8:110592628..110594380,2	MCF-7	breast:

Variant related genes	Relation type
SYBU	TF binding region
ENSG00000165948	Chromatin interaction
ENSG00000089737	Chromatin interaction

rs_ID	r²[population]
rs58483486	1.00[AMR][1000 genomes]
rs58806541	1.00[AMR][1000 genomes]
rs60859789	1.00[AMR][1000 genomes]
rs73700657	1.00[AMR][1000 genomes]

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:110553800-110613000	Weak transcription	NHLF	lung
2	chr8:110583800-110601600	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr8:110586000-110598800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr8:110587800-110605800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr8:110588000-110594800	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr8:110588000-110600600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr8:110588200-110598200	Weak transcription	Ovary	ovary
8	chr8:110588200-110601600	Weak transcription	Left Ventricle	heart
9	chr8:110588600-110596600	Weak transcription	Colon Smooth Muscle	Colon
10	chr8:110589200-110598600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
11	chr8:110589800-110595200	Weak transcription	Psoas Muscle	Psoas
12	chr8:110589800-110598000	Weak transcription	Brain Substantia Nigra	brain
13	chr8:110589800-110598200	Weak transcription	Brain Cingulate Gyrus	brain
14	chr8:110589800-110601600	Weak transcription	Right Atrium	heart
15	chr8:110590000-110597800	Weak transcription	Pancreatic Islets	Pancreatic Islet
16	chr8:110590000-110605600	Weak transcription	K562	blood
17	chr8:110590200-110654800	Weak transcription	Lung	lung
18	chr8:110590800-110597800	Weak transcription	Brain Hippocampus Middle	brain
19	chr8:110591200-110594000	Enhancers	Stomach Mucosa	stomach
20	chr8:110591200-110601600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr8:110591600-110594600	Weak transcription	Adipose Nuclei	Adipose
22	chr8:110591600-110595200	Weak transcription	Fetal Muscle Leg	muscle
23	chr8:110591600-110596000	Weak transcription	HepG2	liver
24	chr8:110591600-110597000	Weak transcription	Rectal Smooth Muscle	rectum
25	chr8:110591600-110597600	Weak transcription	Colonic Mucosa	Colon
26	chr8:110591600-110598400	Weak transcription	Right Ventricle	heart
27	chr8:110591600-110599400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr8:110591600-110601600	Weak transcription	Skeletal Muscle Male	skeletal muscle
29	chr8:110591600-110609400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr8:110591800-110598200	Weak transcription	Fetal Stomach	stomach
31	chr8:110592000-110594000	Enhancers	Hela-S3	cervix
32	chr8:110592000-110601400	Weak transcription	Brain Angular Gyrus	brain
33	chr8:110592200-110594600	Weak transcription	Brain Anterior Caudate	brain
34	chr8:110592200-110595800	Genic enhancers	Liver	Liver
35	chr8:110592200-110596800	Weak transcription	Fetal Intestine Large	intestine
36	chr8:110592200-110597400	Weak transcription	Brain Inferior Temporal Lobe	brain
37	chr8:110592200-110601600	Weak transcription	NHEK	skin
38	chr8:110592200-110604600	Weak transcription	Gastric	stomach
39	chr8:110592400-110594600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr8:110592400-110594600	Weak transcription	Stomach Smooth Muscle	stomach
41	chr8:110592400-110596600	Weak transcription	Fetal Brain Female	brain
42	chr8:110592400-110597600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr8:110592400-110601800	Weak transcription	Brain Germinal Matrix	brain
44	chr8:110592600-110593800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr8:110592800-110597000	Weak transcription	Duodenum Mucosa	Duodenum
46	chr8:110593000-110593800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr8:110593000-110595800	Weak transcription	Fetal Intestine Small	intestine
48	chr8:110593200-110593800	Enhancers	A549	lung
49	chr8:110593200-110593800	Enhancers	HSMMtube	muscle
50	chr8:110593200-110594400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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