Variant report

Variant	rs58534519
Chromosome Location	chr5:58467872-58467873
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2830363	chr5:57893949-58555491	Weak transcription Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv881702	chr5:58432413-58474854	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases
3	esv3400708	chr5:58466820-58469443	Enhancers Weak transcription Genic enhancers Transcr. at gene 5' and 3'	n/a	n/a	inside rSNPs	diseases
4	esv3419986	chr5:58467345-58468743	Weak transcription Transcr. at gene 5' and 3' Genic enhancers	n/a	n/a	inside rSNPs	diseases
5	esv3411639	chr5:58467763-58467931	Weak transcription	n/a	n/a	inside rSNPs	diseases
6	nsv327785	chr5:58467801-58467910	Weak transcription	n/a	n/a	inside rSNPs	diseases
7	nsv328137	chr5:58467862-58467971	Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:58439000-58484000	Weak transcription	Fetal Kidney	kidney
2	chr5:58447600-58473200	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr5:58447600-58473400	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr5:58447600-58479600	Weak transcription	Left Ventricle	heart
5	chr5:58449400-58473600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr5:58449800-58489400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr5:58454400-58472800	Weak transcription	Stomach Smooth Muscle	stomach
8	chr5:58455200-58473400	Weak transcription	Fetal Muscle Leg	muscle
9	chr5:58455800-58473600	Weak transcription	Primary neutrophils fromperipheralblood	blood
10	chr5:58457800-58473400	Weak transcription	Fetal Intestine Small	intestine
11	chr5:58459400-58473400	Weak transcription	Fetal Stomach	stomach
12	chr5:58460000-58472600	Weak transcription	Rectal Mucosa Donor 29	rectum
13	chr5:58460800-58469400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr5:58461000-58484200	Weak transcription	HUVEC	blood vessel
15	chr5:58464200-58484000	Weak transcription	Brain Anterior Caudate	brain
16	chr5:58464200-58485400	Weak transcription	Aorta	Aorta
17	chr5:58464400-58473000	Weak transcription	Right Ventricle	heart
18	chr5:58464600-58474400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr5:58464800-58478800	Weak transcription	Hela-S3	cervix
20	chr5:58465600-58470400	Weak transcription	Rectal Smooth Muscle	rectum
21	chr5:58465800-58469400	Weak transcription	HSMM	muscle
22	chr5:58466000-58472800	Weak transcription	Skeletal Muscle Male	skeletal muscle
23	chr5:58466000-58473600	Weak transcription	Skeletal Muscle Female	skeletal muscle
24	chr5:58466200-58473600	Weak transcription	Placenta Amnion	Placenta Amnion
25	chr5:58466200-58474400	Weak transcription	Colon Smooth Muscle	Colon
26	chr5:58466200-58479400	Weak transcription	Psoas Muscle	Psoas
27	chr5:58467200-58474800	Weak transcription	Esophagus	oesophagus
28	chr5:58467600-58468800	Weak transcription	A549	lung

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