Variant report

Variant	rs58537074
Chromosome Location	chr1:150581653-150581654
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:150549850..150554291-chr1:150574089..150582135,21	MCF-7	breast:
2	chr1:150575837..150580445-chr1:150580466..150584080,8	K562	blood:
3	chr1:150575837..150579446-chr1:150579554..150584365,8	K562	blood:
4	chr1:150551616..150555205-chr1:150579977..150582296,4	K562	blood:

Variant related genes	Relation type
ENSG00000143384	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs3768012	1.00[AFR][1000 genomes]
rs3795702	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs3806389	1.00[AFR][1000 genomes]
rs4970925	1.00[AFR][1000 genomes]
rs4970927	1.00[AFR][1000 genomes]
rs4970947	1.00[AFR][1000 genomes]
rs4970983	1.00[AFR][1000 genomes]
rs57263353	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs58550476	0.80[AMR][1000 genomes]
rs58585637	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006838	chr1:150440214-150722783	Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	175 gene(s)	inside rSNPs	diseases
2	nsv535155	chr1:150535349-150582395	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	130 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:150553000-150583200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr1:150553200-150581800	Weak transcription	Stomach Smooth Muscle	stomach
3	chr1:150553200-150581800	Weak transcription	Dnd41	blood
4	chr1:150553200-150583200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
5	chr1:150553200-150592000	Weak transcription	Fetal Kidney	kidney
6	chr1:150554000-150583200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
7	chr1:150555400-150582600	Weak transcription	Primary B cells from cord blood	blood
8	chr1:150561800-150581800	Weak transcription	Brain Substantia Nigra	brain
9	chr1:150562200-150583200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
10	chr1:150563000-150583800	Weak transcription	Fetal Lung	lung
11	chr1:150564400-150583800	Weak transcription	Rectal Mucosa Donor 29	rectum
12	chr1:150566400-150583800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr1:150568000-150583000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
14	chr1:150569200-150582200	Weak transcription	Brain Anterior Caudate	brain
15	chr1:150569200-150582200	Weak transcription	GM12878-XiMat	blood
16	chr1:150570400-150582200	Weak transcription	Primary hematopoietic stem cells	blood
17	chr1:150571000-150583800	Weak transcription	Primary T cells from cord blood	blood
18	chr1:150572800-150581800	Weak transcription	Brain Hippocampus Middle	brain
19	chr1:150573200-150583000	Weak transcription	Primary B cells from peripheral blood	blood
20	chr1:150573400-150581800	Weak transcription	Brain Cingulate Gyrus	brain
21	chr1:150573400-150582000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr1:150573400-150582200	Weak transcription	Primary T cells fromperipheralblood	blood
23	chr1:150573400-150582200	Weak transcription	Primary T helper cells fromperipheralblood	blood
24	chr1:150573400-150582200	Weak transcription	Brain Angular Gyrus	brain
25	chr1:150573400-150583000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
26	chr1:150573400-150583200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
27	chr1:150573400-150583400	Weak transcription	Sigmoid Colon	Sigmoid Colon
28	chr1:150573400-150583600	Weak transcription	Colonic Mucosa	Colon
29	chr1:150573400-150584200	Weak transcription	Thymus	Thymus
30	chr1:150573400-150587800	Weak transcription	Brain Germinal Matrix	brain
31	chr1:150573600-150583800	Weak transcription	Fetal Brain Female	brain
32	chr1:150573600-150583800	Weak transcription	Fetal Muscle Trunk	muscle
33	chr1:150575400-150583400	Weak transcription	Duodenum Smooth Muscle	Duodenum
34	chr1:150576200-150581800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
35	chr1:150576200-150591000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
36	chr1:150576400-150582200	Weak transcription	H9 Cell Line	embryonic stem cell
37	chr1:150577000-150588400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
38	chr1:150577200-150581800	Weak transcription	Fetal Muscle Leg	muscle
39	chr1:150577400-150581800	Weak transcription	Colon Smooth Muscle	Colon
40	chr1:150577400-150581800	Weak transcription	Placenta Amnion	Placenta Amnion
41	chr1:150577400-150581800	Weak transcription	Rectal Smooth Muscle	rectum
42	chr1:150577400-150585800	Weak transcription	Aorta	Aorta
43	chr1:150577400-150587800	Weak transcription	Esophagus	oesophagus
44	chr1:150577600-150581800	Weak transcription	HUES48 Cell Line	embryonic stem cell
45	chr1:150577600-150581800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
46	chr1:150577600-150581800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
47	chr1:150577600-150582000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
48	chr1:150577600-150582200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
49	chr1:150577600-150582200	Weak transcription	HSMMtube	muscle
50	chr1:150577600-150582400	Weak transcription	Duodenum Mucosa	Duodenum

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