Variant report

Variant	rs58538319
Chromosome Location	chr7:119540614-119540615
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 151 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:136)

rs_ID	r²[population]
rs10085666	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10233853	1.00[EUR][1000 genomes]
rs10235983	1.00[EUR][1000 genomes]
rs10244657	1.00[EUR][1000 genomes]
rs10247975	1.00[EUR][1000 genomes]
rs10268381	1.00[EUR][1000 genomes]
rs10274212	1.00[EUR][1000 genomes]
rs10274517	1.00[EUR][1000 genomes]
rs10275081	1.00[EUR][1000 genomes]
rs10281584	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1099822	1.00[EUR][1000 genomes]
rs12333906	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12374758	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12533333	1.00[ASN][1000 genomes]
rs13230241	1.00[EUR][1000 genomes]
rs1357675	0.90[EUR][1000 genomes]
rs1404081	1.00[EUR][1000 genomes]
rs1404082	1.00[EUR][1000 genomes]
rs1404084	1.00[EUR][1000 genomes]
rs1524200	1.00[EUR][1000 genomes]
rs1524201	1.00[EUR][1000 genomes]
rs1524204	1.00[EUR][1000 genomes]
rs1533983	1.00[ASN][1000 genomes]
rs1581503	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1581505	1.00[EUR][1000 genomes]
rs1581506	1.00[EUR][1000 genomes]
rs1589753	1.00[EUR][1000 genomes]
rs1608584	1.00[EUR][1000 genomes]
rs17142322	1.00[ASN][1000 genomes]
rs17142348	1.00[ASN][1000 genomes]
rs17142414	1.00[ASN][1000 genomes]
rs1851807	1.00[EUR][1000 genomes]
rs1916858	1.00[ASN][1000 genomes]
rs1949782	1.00[EUR][1000 genomes]
rs1980321	1.00[EUR][1000 genomes]
rs2049378	0.93[EUR][1000 genomes]
rs2049380	1.00[EUR][1000 genomes]
rs2049382	1.00[EUR][1000 genomes]
rs2049383	1.00[EUR][1000 genomes]
rs2056583	1.00[EUR][1000 genomes]
rs2140567	1.00[ASN][1000 genomes]
rs2140568	1.00[ASN][1000 genomes]
rs2204310	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2204311	1.00[EUR][1000 genomes]
rs2263403	1.00[EUR][1000 genomes]
rs2402487	1.00[ASN][1000 genomes]
rs2402489	1.00[EUR][1000 genomes]
rs28451901	1.00[EUR][1000 genomes]
rs28760947	1.00[ASN][1000 genomes]
rs28776558	1.00[ASN][1000 genomes]
rs4278103	1.00[EUR][1000 genomes]
rs4338035	0.90[EUR][1000 genomes]
rs4460311	1.00[EUR][1000 genomes]
rs4493836	1.00[ASN][1000 genomes]
rs4529399	0.92[EUR][1000 genomes]
rs4610676	1.00[ASN][1000 genomes]
rs4727900	1.00[EUR][1000 genomes]
rs4727902	1.00[EUR][1000 genomes]
rs4730942	0.90[EUR][1000 genomes]
rs56291644	1.00[ASN][1000 genomes]
rs58135787	1.00[EUR][1000 genomes]
rs58473239	1.00[ASN][1000 genomes]
rs58859180	1.00[EUR][1000 genomes]
rs60495904	1.00[ASN][1000 genomes]
rs60744696	1.00[ASN][1000 genomes]
rs61081273	1.00[ASN][1000 genomes]
rs6466712	1.00[EUR][1000 genomes]
rs6944434	1.00[ASN][1000 genomes]
rs6945733	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6947563	1.00[ASN][1000 genomes]
rs6952445	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6954234	1.00[ASN][1000 genomes]
rs6958697	0.89[EUR][1000 genomes]
rs6964883	1.00[ASN][1000 genomes]
rs6964884	1.00[ASN][1000 genomes]
rs6968560	1.00[EUR][1000 genomes]
rs6975903	1.00[ASN][1000 genomes]
rs73472908	1.00[ASN][1000 genomes]
rs73472910	1.00[ASN][1000 genomes]
rs73472916	1.00[EUR][1000 genomes]
rs73472917	1.00[EUR][1000 genomes]
rs73487136	1.00[ASN][1000 genomes]
rs73487146	1.00[ASN][1000 genomes]
rs73487152	1.00[ASN][1000 genomes]
rs73487156	1.00[ASN][1000 genomes]
rs73487167	1.00[ASN][1000 genomes]
rs73487175	1.00[ASN][1000 genomes]
rs73487178	1.00[ASN][1000 genomes]
rs73487179	1.00[ASN][1000 genomes]
rs73487183	1.00[ASN][1000 genomes]
rs73487186	1.00[ASN][1000 genomes]
rs73487191	1.00[ASN][1000 genomes]
rs73487193	1.00[ASN][1000 genomes]
rs73487195	1.00[ASN][1000 genomes]
rs73487201	1.00[ASN][1000 genomes]
rs73489103	1.00[ASN][1000 genomes]
rs73489107	1.00[ASN][1000 genomes]
rs73489110	1.00[ASN][1000 genomes]
rs73489120	1.00[ASN][1000 genomes]
rs73489137	1.00[ASN][1000 genomes]
rs73489138	1.00[ASN][1000 genomes]
rs73489140	1.00[ASN][1000 genomes]
rs73489143	1.00[ASN][1000 genomes]
rs73489150	1.00[ASN][1000 genomes]
rs73489153	1.00[ASN][1000 genomes]
rs73722666	1.00[ASN][1000 genomes]
rs7779237	1.00[EUR][1000 genomes]
rs7780733	1.00[ASN][1000 genomes]
rs7781144	1.00[EUR][1000 genomes]
rs7782751	1.00[EUR][1000 genomes]
rs7788783	1.00[EUR][1000 genomes]
rs7791400	1.00[EUR][1000 genomes]
rs7797664	1.00[ASN][1000 genomes]
rs7799121	1.00[EUR][1000 genomes]
rs7799517	1.00[ASN][1000 genomes]
rs7808015	1.00[EUR][1000 genomes]
rs7809848	1.00[ASN][1000 genomes]
rs846422	1.00[EUR][1000 genomes]
rs846423	1.00[EUR][1000 genomes]
rs846425	1.00[EUR][1000 genomes]
rs846426	1.00[EUR][1000 genomes]
rs846432	1.00[EUR][1000 genomes]
rs846433	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs846434	1.00[EUR][1000 genomes]
rs846435	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs846440	1.00[EUR][1000 genomes]
rs846442	1.00[EUR][1000 genomes]
rs846443	1.00[EUR][1000 genomes]
rs846449	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs882837	1.00[ASN][1000 genomes]
rs884489	1.00[ASN][1000 genomes]
rs9641626	1.00[EUR][1000 genomes]
rs9641627	0.96[EUR][1000 genomes]
rs9641628	1.00[EUR][1000 genomes]
rs9690438	1.00[ASN][1000 genomes]
rs9691446	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889115	chr7:119270386-119577292	ZNF genes & repeats Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1029023	chr7:119292763-119606632	Enhancers ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1023813	chr7:119292763-119606803	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv524225	chr7:119293417-119606632	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv1029841	chr7:119299627-119606632	Enhancers Genic enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv1024175	chr7:119299627-119606803	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv1028812	chr7:119310497-119604904	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv539097	chr7:119310497-119604904	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
9	nsv1033418	chr7:119324894-119600025	Enhancers Genic enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
10	nsv539098	chr7:119324894-119600025	Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
11	nsv470388	chr7:119464310-119790102	Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
12	esv1833643	chr7:119484927-119557536	Weak transcription Enhancers Genic enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
13	nsv464706	chr7:119514703-119612541	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
14	nsv608324	chr7:119514703-119612541	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
15	esv2753623	chr7:119532049-119770049	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:119539800-119541800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr7:119539800-119541800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr7:119540400-119543800	Genic enhancers	K562	blood

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