Variant report

Variant	rs58539933
Chromosome Location	chr20:11637947-11637948
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs6109007	1.00[EUR][1000 genomes]
rs73255480	1.00[AMR][1000 genomes]
rs73899023	1.00[AMR][1000 genomes]
rs73899024	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73899025	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73899026	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73899027	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73899028	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73899029	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1851689	chr20:11515516-11758411	Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:11636400-11638600	Weak transcription	Pancreatic Islets	Pancreatic Islet

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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