Variant report

Variant	rs58542606
Chromosome Location	chr11:73885741-73885742
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:73884724..73886945-chr11:73890739..73892576,2	MCF-7	breast:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11236029	0.81[AFR][1000 genomes]
rs57002848	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59043072	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59076920	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59864588	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60041577	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61377275	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7119710	0.83[AFR][1000 genomes]
rs7126688	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73549042	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7943275	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8179180	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757451	chr11:73842609-74545888	Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Enhancers Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	esv2759837	chr11:73842609-74557597	Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
3	esv34979	chr11:73878688-74533452	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	85 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:95 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:73880200-73886600	Active TSS	HSMMtube	muscle
2	chr11:73883000-73902000	Weak transcription	Lung	lung
3	chr11:73883200-73885800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
4	chr11:73883600-73887800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr11:73883600-73887800	Weak transcription	Right Atrium	heart
6	chr11:73883600-73893800	Weak transcription	Left Ventricle	heart
7	chr11:73883600-73895600	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr11:73883600-73901800	Weak transcription	Primary B cells from cord blood	blood
9	chr11:73883600-73901800	Weak transcription	Primary T cells fromperipheralblood	blood
10	chr11:73883600-73901800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr11:73883600-73902000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr11:73883600-73915000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr11:73883600-73915200	Weak transcription	Fetal Muscle Trunk	muscle
14	chr11:73883600-73921000	Weak transcription	Esophagus	oesophagus
15	chr11:73883600-73923200	Weak transcription	Aorta	Aorta
16	chr11:73883800-73887600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
17	chr11:73883800-73890200	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr11:73883800-73898800	Weak transcription	Fetal Thymus	thymus
19	chr11:73883800-73901200	Weak transcription	Primary hematopoietic stem cells	blood
20	chr11:73883800-73901200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
21	chr11:73883800-73901600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
22	chr11:73883800-73902000	Weak transcription	Fetal Stomach	stomach
23	chr11:73883800-73902200	Weak transcription	Fetal Muscle Leg	muscle
24	chr11:73883800-73902600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr11:73883800-73915000	Weak transcription	Sigmoid Colon	Sigmoid Colon
26	chr11:73883800-73920000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr11:73883800-73923200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
28	chr11:73884000-73888200	Weak transcription	Adipose Nuclei	Adipose
29	chr11:73884000-73902600	Weak transcription	Right Ventricle	heart
30	chr11:73884200-73885800	Enhancers	Breast Myoepithelial Primary Cells	Breast
31	chr11:73884200-73886000	Enhancers	Primary T helper cells PMA-I stimulated	--
32	chr11:73884200-73886000	Enhancers	Skeletal Muscle Male	skeletal muscle
33	chr11:73884200-73886600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr11:73884200-73886800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr11:73884200-73887000	Weak transcription	Brain Germinal Matrix	brain
36	chr11:73884200-73888200	Weak transcription	Fetal Intestine Large	intestine
37	chr11:73884200-73888400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr11:73884200-73888800	Weak transcription	HUES48 Cell Line	embryonic stem cell
39	chr11:73884200-73889000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr11:73884200-73889400	Weak transcription	Fetal Intestine Small	intestine
41	chr11:73884200-73890200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr11:73884200-73890400	Weak transcription	Cortex derived primary cultured neurospheres	brain
43	chr11:73884200-73890600	Weak transcription	Fetal Brain Female	brain
44	chr11:73884200-73900600	Weak transcription	HUES64 Cell Line	embryonic stem cell
45	chr11:73884200-73901000	Weak transcription	Primary T cells from cord blood	blood
46	chr11:73884200-73901200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
47	chr11:73884200-73901200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr11:73884200-73901400	Weak transcription	H1 Cell Line	embryonic stem cell
49	chr11:73884200-73907000	Weak transcription	Fetal Lung	lung
50	chr11:73884200-73915000	Weak transcription	Brain Anterior Caudate	brain

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