Variant report

Variant	rs58544745
Chromosome Location	chr9:21575659-21575660
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs73424400	1.00[AMR][1000 genomes]
rs73426615	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73426623	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73426653	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031432	chr9:21472601-21608774	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	122 gene(s)	inside rSNPs	diseases
2	nsv540085	chr9:21472601-21608774	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	122 gene(s)	inside rSNPs	diseases
3	nsv1029634	chr9:21542970-21765286	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:21565600-21576000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
2	chr9:21568200-21576200	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr9:21571200-21575800	Weak transcription	NHLF	lung
4	chr9:21574000-21576000	Enhancers	Hela-S3	cervix
5	chr9:21574200-21575800	Enhancers	NH-A	brain
6	chr9:21575000-21575800	Enhancers	A549	lung
7	chr9:21575200-21576000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr9:21575400-21575800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr9:21575400-21575800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr9:21575400-21576200	Enhancers	HMEC	breast
11	chr9:21575400-21576200	Enhancers	NHEK	skin
12	chr9:21575400-21577000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr9:21575400-21577800	Enhancers	Breast Myoepithelial Primary Cells	Breast
14	chr9:21575600-21576000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr9:21575600-21576000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr9:21575600-21576000	Enhancers	Muscle Satellite Cultured Cells	--
17	chr9:21575600-21576000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr9:21575600-21576000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr9:21575600-21576000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr9:21575600-21576000	Enhancers	HSMM	muscle
21	chr9:21575600-21576000	Enhancers	HSMMtube	muscle
22	chr9:21575600-21576000	Enhancers	NHDF-Ad	bronchial
23	chr9:21575600-21576000	Enhancers	Osteobl	bone
24	chr9:21575600-21576200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr9:21575600-21576200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr9:21575600-21577000	Enhancers	Placenta Amnion	Placenta Amnion
27	chr9:21575600-21577200	Enhancers	Cortex derived primary cultured neurospheres	brain

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