Variant report

Variant	rs58547847
Chromosome Location	chr1:56008079-56008080
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs58581179	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv10184	chr1:55728755-56084833	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56005600-56010400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr1:56006000-56008800	Weak transcription	HSMMtube	muscle
3	chr1:56006200-56009400	Enhancers	Muscle Satellite Cultured Cells	--
4	chr1:56006200-56012400	Weak transcription	Colon Smooth Muscle	Colon
5	chr1:56006600-56009400	Enhancers	HSMM	muscle
6	chr1:56006800-56009800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr1:56007000-56011600	Weak transcription	Brain Hippocampus Middle	brain
8	chr1:56007200-56011600	Weak transcription	Brain Substantia Nigra	brain
9	chr1:56007400-56009200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr1:56007400-56009600	Enhancers	NHDF-Ad	bronchial
11	chr1:56007600-56009600	Enhancers	Osteobl	bone
12	chr1:56007800-56008400	Enhancers	NHLF	lung
13	chr1:56007800-56008800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr1:56007800-56009400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr1:56007800-56009400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr1:56008000-56008600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr1:56008000-56009200	Enhancers	NH-A	brain
18	chr1:56008000-56009400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr1:56008000-56009400	Enhancers	Hela-S3	cervix

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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