Variant report

Variant	rs58550007
Chromosome Location	chr6:24122561-24122562
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr6:24122547-24122597	SK-N-MC	brain:	n/a
2	chr6:24122547-24122597	SAEC	small airway:	n/a
3	chr6:24122547-24122597	NHDF-neo	bronchial:	n/a
4	chr6:24122547-24122597	AG04450	lung:	fetal
5	chr6:24122547-24122597	PrEC	prostate:	n/a
6	chr6:24122547-24122597	AG10803	skin:	n/a
7	chr6:24122547-24122597	HRE	kidney:	n/a
8	chr6:24122547-24122597	MCF-7	breast:	n/a
9	chr6:24122547-24122597	AG04449	skin:	fetal
10	chr6:24122547-24122597	NB4	blood:	n/a
11	chr6:24122547-24122597	HIPEpiC	eye:	n/a
12	chr6:24122547-24122597	ovcar-3	ovarian:	n/a
13	chr6:24122547-24122597	ProgFib	skin:	n/a
14	chr6:24122547-24122597	HEK293	kidney:	embryo
15	chr6:24122547-24122597	SK-N-SH	brain:	n/a
16	chr6:24122547-24122597	U87	brain:	n/a
17	chr6:24122547-24122597	GM12878	blood:	n/a
18	chr6:24122547-24122597	IMR90	lung:	fetal
19	chr6:24122547-24122597	NT2-D1	testis:	n/a
20	chr6:24122547-24122597	HAEpiC	amniotic membrane:	n/a
21	chr6:24122547-24122597	HNPCEpiC	eye:	n/a
22	chr6:24122547-24122597	HEEpiC	esophagus:	n/a
23	chr6:24122547-24122597	HCF	heart:	n/a
24	chr6:24122547-24122597	H1-hESC	embryonic stem cell:	embryo
25	chr6:24122547-24122597	MCF10A-Er-Src	breast:	n/a
26	chr6:24122547-24122597	HCM	heart:	n/a
27	chr6:24122547-24122597	HepG2	liver:	n/a
28	chr6:24122547-24122597	BJ	skin:	n/a
29	chr6:24122547-24122597	HRCEpiC	kidney:	n/a
30	chr6:24122547-24122597	AG09309	skin:	n/a
31	chr6:24122547-24122597	AG09319	gingival:	n/a
32	chr6:24122547-24122597	NH-A	brain:	n/a
33	chr6:24122547-24122597	HCPEpiC	choroid plexus:	n/a
34	chr6:24122547-24122597	Hepatocyte	liver:	n/a
35	chr6:24122547-24122597	HCT-116	colon:	n/a
36	chr6:24122547-24122597	RPTEC	kidney:	n/a
37	chr6:24122547-24122597	ECC-1	luminal epithelium:	n/a
38	chr6:24122547-24122597	BE2_C	brain:	n/a
39	chr6:24122547-24122597	T-47D	breast:	n/a
40	chr6:24122547-24122597	PFSK-1	brain:	n/a
41	chr6:24122547-24122597	A549	lung:	n/a
42	chr6:24122547-24122597	NHBE	bronchial:	n/a
43	chr6:24122547-24122597	HL-60	blood:	n/a
44	chr6:24122547-24122597	AoSMC	blood vessel:	n/a
45	chr6:24122547-24122597	HRPEpiC	eye:	n/a
46	chr6:24122547-24122597	SK-N-SH_RA	brain:	n/a
47	chr6:24122547-24122597	K562	blood:	n/a
48	chr6:24122547-24122597	Caco-2	colon:	n/a
49	chr6:24122547-24122597	GM19239	blood:	n/a
50	chr6:24122547-24122597	PANC-1	pancreas:	n/a

No data

Variant related genes	Relation type
NRSN1	CpG island

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs16888667	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16888692	0.83[AMR][1000 genomes]
rs2068184	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57615128	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57822610	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58015791	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59559135	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59697902	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61322568	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6907137	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6927058	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6927451	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029930	chr6:23481989-24289948	Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:24101000-24126200	Weak transcription	Pancreas	Pancrea
2	chr6:24118000-24126000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr6:24119800-24126000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr6:24121800-24122800	Enhancers	Fetal Brain Female	brain
5	chr6:24121800-24123000	Enhancers	Brain Germinal Matrix	brain
6	chr6:24122000-24123000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
7	chr6:24122200-24122600	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr6:24122400-24122600	Flanking Active TSS	HepG2	liver

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