Variant report

Variant	rs58556715
Chromosome Location	chr1:211760069-211760070
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	HCFC1	chr1:211760021-211760210	K562	blood:	n/a	n/a
2	SPI1	chr1:211760021-211760151	GM12878	blood:	n/a	chr1:211760103-211760112
3	SPI1	chr1:211759925-211760227	GM12891	blood:	n/a	chr1:211760103-211760112
4	SPI1	chr1:211759914-211760239	GM12891	blood:	n/a	chr1:211760103-211760112
5	ATF1	chr1:211759868-211760226	K562	blood:	n/a	n/a
6	SPI1	chr1:211759942-211760205	GM12878	blood:	n/a	chr1:211760103-211760112

No.	Distal block	Cell Line	Cell type
1	chr1:211759135..211762333-chr1:211776227..211780241,4	K562	blood:
2	chr1:211742646..211744909-chr1:211759048..211760986,2	K562	blood:
3	chr1:211750994..211754600-chr1:211757075..211760507,5	MCF-7	breast:
4	chr1:211758328..211760166-chr1:211768188..211770174,2	K562	blood:

Variant related genes	Relation type
ENSG00000261314	TF binding region
ENSG00000170385	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs58334334	0.95[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832514	chr1:211630247-211794963	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	esv1796467	chr1:211726975-211769893	Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	esv1840920	chr1:211726975-211769893	Enhancers Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:211754000-211765400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr1:211755600-211762800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr1:211756200-211760200	Weak transcription	Primary B cells from peripheral blood	blood
4	chr1:211756600-211763000	Weak transcription	NHDF-Ad	bronchial
5	chr1:211756800-211762200	Weak transcription	Osteobl	bone
6	chr1:211757000-211762600	Weak transcription	Primary hematopoietic stem cells	blood
7	chr1:211757000-211763000	Weak transcription	Primary B cells from cord blood	blood
8	chr1:211757400-211762400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr1:211757400-211762600	Weak transcription	Spleen	Spleen
10	chr1:211757400-211765400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr1:211757400-211775200	Weak transcription	Fetal Intestine Small	intestine
12	chr1:211757600-211762600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr1:211757600-211763600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
14	chr1:211758000-211762000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr1:211758000-211762000	Weak transcription	Primary neutrophils fromperipheralblood	blood
16	chr1:211758200-211760200	Weak transcription	K562	blood
17	chr1:211758600-211765400	Weak transcription	Placenta	Placenta
18	chr1:211759200-211760600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr1:211759600-211764800	Enhancers	Primary monocytes fromperipheralblood	blood
20	chr1:211759800-211760400	Enhancers	Monocytes-CD14+_RO01746	blood
21	chr1:211759800-211760600	Enhancers	GM12878-XiMat	blood
22	chr1:211760000-211760800	Enhancers	Primary hematopoietic stem cells short term culture	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links