Variant report

Variant rs58561298
Chromosome Location chr5:145450295-145450296
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:32 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:145412600-145453200 Weak transcription Pancreas Pancrea
2 chr5:145429600-145459600 Weak transcription Stomach Mucosa stomach
3 chr5:145434400-145450800 Weak transcription Brain Anterior Caudate brain
4 chr5:145436000-145451200 Weak transcription HepG2 liver
5 chr5:145442400-145461200 Weak transcription Sigmoid Colon Sigmoid Colon
6 chr5:145442600-145450400 Weak transcription Aorta Aorta
7 chr5:145442800-145450800 Weak transcription Skeletal Muscle Male skeletal muscle
8 chr5:145443200-145458000 Weak transcription Liver Liver
9 chr5:145443600-145461000 Weak transcription Colonic Mucosa Colon
10 chr5:145444000-145451000 Weak transcription Fetal Stomach stomach
11 chr5:145446800-145450400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
12 chr5:145447400-145450400 Weak transcription HMEC breast
13 chr5:145447400-145455000 Weak transcription Rectal Mucosa Donor 31 rectum
14 chr5:145447600-145455400 Weak transcription Fetal Intestine Large intestine
15 chr5:145447800-145450400 Weak transcription Skeletal Muscle Female skeletal muscle
16 chr5:145447800-145450600 Weak transcription Esophagus oesophagus
17 chr5:145447800-145452800 Weak transcription Gastric stomach
18 chr5:145447800-145453200 Weak transcription Right Ventricle heart
19 chr5:145448000-145460000 Weak transcription Fetal Intestine Small intestine
20 chr5:145448200-145455600 Weak transcription Breast Myoepithelial Primary Cells Breast
21 chr5:145448400-145450600 Weak transcription NHEK skin
22 chr5:145448400-145458000 Weak transcription Rectal Mucosa Donor 29 rectum
23 chr5:145448600-145455800 Weak transcription Duodenum Mucosa Duodenum
24 chr5:145448800-145450800 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
25 chr5:145449800-145451800 Enhancers GM12878-XiMat blood
26 chr5:145449800-145454200 Enhancers Left Ventricle heart
27 chr5:145450000-145451600 Weak transcription Small Intestine intestine
28 chr5:145450000-145458600 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
29 chr5:145450200-145450400 Flanking Active TSS Fetal Heart heart
30 chr5:145450200-145450600 Enhancers Right Atrium heart
31 chr5:145450200-145451000 Enhancers Psoas Muscle Psoas
32 chr5:145450200-145451600 Weak transcription H9 Cell Line embryonic stem cell

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