Variant report

Variant	rs58572858
Chromosome Location	chr5:178265921-178265922
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:5)
CpG islands
(count:0)
Chromatin interactive
region (count:4)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:5 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ATF1	chr5:178265901-178266202	K562	blood:	n/a	n/a
2	JUND	chr5:178265912-178266614	K562	blood:	n/a	n/a
3	NR2F2	chr5:178265879-178266668	MCF-7	breast:	n/a	n/a
4	GATA3	chr5:178265881-178266795	MCF-7	breast:	n/a	n/a
5	GATA3	chr5:178265870-178266766	MCF-7	breast:	n/a	n/a

No data

(count:4 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr5:178157414..178158390-chr5:178265741..178266981,10	MCF-7	breast:
2	chr5:178214124..178214763-chr5:178265905..178266637,2	MCF-7	breast:
3	chr5:178264186..178266313-chr5:178270488..178273068,2	MCF-7	breast:
4	chr5:178050940..178053910-chr5:178263858..178266243,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000253725	TF binding region
ENSG00000169131	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10035451	0.83[ASN][1000 genomes]
rs10061541	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10078463	0.80[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs12658070	0.88[ASN][1000 genomes]
rs28605895	0.88[ASN][1000 genomes]
rs35086073	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35580826	0.84[ASN][1000 genomes]
rs61484383	0.87[ASN][1000 genomes]
rs62393033	0.90[ASN][1000 genomes]
rs6600960	0.80[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs6600967	0.86[ASN][1000 genomes]
rs6861545	0.90[ASN][1000 genomes]
rs6865763	0.83[ASN][1000 genomes]
rs6875423	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6877165	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6884383	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73324156	0.83[ASN][1000 genomes]
rs7715130	0.88[ASN][1000 genomes]
rs7715917	0.80[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs7720407	0.86[ASN][1000 genomes]
rs7729567	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031206	chr5:178149292-178283614	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv537973	chr5:178149292-178283614	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv883218	chr5:178219855-178349391	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv968861	chr5:178251700-178275142	Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	esv18838	chr5:178258606-178266167	ZNF genes & repeats Active TSS Flanking Active TSS Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:178263600-178286400	Weak transcription	Right Atrium	heart
2	chr5:178265200-178266400	Enhancers	Placenta	Placenta

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