The 2.0 version of rSNPBase

Variant report

Variant rs58581074
Chromosome Location chr5:142537131-142537132
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:66 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:142500200-142544400 Weak transcription Primary T killer memory cells from peripheral blood blood
2 chr5:142514600-142538800 Weak transcription Primary T helper naive cells fromperipheralblood blood
3 chr5:142516400-142556800 Weak transcription Cortex derived primary cultured neurospheres brain
4 chr5:142522800-142547600 Weak transcription Brain Angular Gyrus brain
5 chr5:142524000-142537400 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
6 chr5:142525800-142537600 Weak transcription Brain Hippocampus Middle brain
7 chr5:142527600-142552600 Weak transcription Brain Anterior Caudate brain
8 chr5:142529000-142567600 Weak transcription Fetal Thymus thymus
9 chr5:142529200-142569400 Weak transcription Primary B cells from cord blood blood
10 chr5:142530000-142537800 Weak transcription Dnd41 blood
11 chr5:142530000-142544600 Weak transcription Thymus Thymus
12 chr5:142530000-142545400 Weak transcription Fetal Intestine Small intestine
13 chr5:142530000-142545400 Weak transcription HepG2 liver
14 chr5:142530000-142560400 Weak transcription Spleen Spleen
15 chr5:142530200-142541200 Weak transcription Primary T cells fromperipheralblood blood
16 chr5:142530200-142545800 Weak transcription Duodenum Mucosa Duodenum
17 chr5:142530400-142545200 Weak transcription Fetal Intestine Large intestine
18 chr5:142530400-142545600 Weak transcription Liver Liver
19 chr5:142531000-142545800 Weak transcription Rectal Mucosa Donor 29 rectum
20 chr5:142531600-142545400 Weak transcription Rectal Mucosa Donor 31 rectum
21 chr5:142533000-142545400 Weak transcription Lung lung
22 chr5:142533000-142545800 Weak transcription Stomach Mucosa stomach
23 chr5:142533000-142560400 Weak transcription Gastric stomach
24 chr5:142533200-142537200 Strong transcription Monocytes-CD14+_RO01746 blood
25 chr5:142533400-142547400 Weak transcription Primary hematopoietic stem cells blood
26 chr5:142533600-142544200 Weak transcription GM12878-XiMat blood
27 chr5:142535000-142538400 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
28 chr5:142535000-142544800 Weak transcription Sigmoid Colon Sigmoid Colon
29 chr5:142535000-142546400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
30 chr5:142535000-142561600 Weak transcription Esophagus oesophagus
31 chr5:142535000-142561800 Weak transcription Duodenum Smooth Muscle Duodenum
32 chr5:142535200-142537800 Weak transcription HUES64 Cell Line embryonic stem cell
33 chr5:142535200-142541600 Weak transcription Left Ventricle heart
34 chr5:142535200-142545600 Weak transcription Placenta Placenta
35 chr5:142535200-142547400 Weak transcription ES-I3 Cell Line embryonic stem cell
36 chr5:142535200-142552600 Weak transcription Fetal Muscle Trunk muscle
37 chr5:142535200-142563000 Weak transcription Brain Substantia Nigra brain
38 chr5:142535400-142540200 Weak transcription Psoas Muscle Psoas
39 chr5:142535400-142541000 Weak transcription Primary Natural Killer cells fromperipheralblood blood
40 chr5:142535400-142545800 Weak transcription Breast Myoepithelial Primary Cells Breast
41 chr5:142535400-142554600 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
42 chr5:142536000-142537200 Weak transcription HSMM muscle
43 chr5:142536000-142538000 Weak transcription HSMMtube muscle
44 chr5:142536000-142541200 Weak transcription Muscle Satellite Cultured Cells --
45 chr5:142536200-142541000 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
46 chr5:142536200-142541000 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
47 chr5:142536200-142541400 Weak transcription Osteobl bone
48 chr5:142536200-142547200 Weak transcription Small Intestine intestine
49 chr5:142536400-142538400 Weak transcription Primary neutrophils fromperipheralblood blood
50 chr5:142536400-142540400 Weak transcription Skeletal Muscle Male skeletal muscle

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Last update: Aug 31, 2015