Variant report

Variant	rs58581377
Chromosome Location	chr21:40165834-40165835
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr21:40159408..40162072-chr21:40163674..40168810,7	MCF-7	breast:
2	chr21:40164946..40166876-chr21:40169139..40171967,2	K562	blood:
3	chr21:40164421..40166863-chr21:40178031..40179684,2	MCF-7	breast:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs16996828	0.83[AMR][1000 genomes]
rs16997100	1.00[ASN][1000 genomes]
rs55742027	0.83[AMR][1000 genomes]
rs57766236	0.83[AMR][1000 genomes]
rs57775548	0.83[AMR][1000 genomes]
rs59774925	0.83[AMR][1000 genomes]
rs60197819	0.83[AMR][1000 genomes]
rs7278110	0.83[AMR][1000 genomes]
rs7279960	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7280243	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7283841	0.83[AMR][1000 genomes]
rs73442765	0.83[AMR][1000 genomes]
rs73442769	0.83[AMR][1000 genomes]
rs73442773	0.83[AMR][1000 genomes]
rs73442777	0.83[AMR][1000 genomes]
rs73442778	0.83[AMR][1000 genomes]
rs8132431	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1058591	chr21:40114130-40190594	Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:40160200-40167400	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr21:40160600-40169200	Weak transcription	Placenta	Placenta
3	chr21:40160800-40167000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr21:40162400-40167400	Weak transcription	K562	blood
5	chr21:40162800-40167200	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr21:40163000-40170400	Weak transcription	Colonic Mucosa	Colon
7	chr21:40163000-40171400	Enhancers	Rectal Mucosa Donor 31	rectum
8	chr21:40163400-40167200	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr21:40163400-40175400	Weak transcription	Primary hematopoietic stem cells	blood
10	chr21:40163600-40167400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr21:40164400-40171200	Enhancers	Duodenum Mucosa	Duodenum
12	chr21:40164600-40167800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr21:40164600-40167800	Enhancers	Stomach Mucosa	stomach
14	chr21:40164800-40166000	Weak transcription	Liver	Liver
15	chr21:40164800-40166400	ZNF genes & repeats	Fetal Intestine Small	intestine
16	chr21:40165000-40166400	Enhancers	Fetal Thymus	thymus
17	chr21:40165000-40176600	Enhancers	Fetal Intestine Large	intestine
18	chr21:40165200-40166200	Enhancers	Thymus	Thymus
19	chr21:40165600-40166800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
20	chr21:40165600-40171000	Enhancers	HepG2	liver
21	chr21:40165800-40166200	Enhancers	Small Intestine	intestine
22	chr21:40165800-40166400	Enhancers	Pancreas	Pancrea
23	chr21:40165800-40167800	Enhancers	Esophagus	oesophagus
24	chr21:40165800-40168400	Enhancers	A549	lung
25	chr21:40165800-40169200	Enhancers	Hela-S3	cervix

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