Variant report

Variant	rs58584483
Chromosome Location	chr19:45546298-45546299
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs16979659	1.00[AMR][1000 genomes]
rs16979703	1.00[AMR][1000 genomes]
rs34858267	0.81[AFR][1000 genomes]
rs35527954	0.81[AFR][1000 genomes]
rs56213215	1.00[AMR][1000 genomes]
rs56405239	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57454146	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60509946	1.00[AMR][1000 genomes]
rs60530130	1.00[AMR][1000 genomes]
rs73939603	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73939647	1.00[AMR][1000 genomes]
rs73939649	1.00[AMR][1000 genomes]
rs73941103	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73941104	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3449420	chr19:45523560-45626884	Flanking Active TSS Active TSS Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:45542800-45571200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr19:45543400-45550600	Strong transcription	HUES64 Cell Line	embryonic stem cell
3	chr19:45543600-45546400	Genic enhancers	Primary T helper cells PMA-I stimulated	--
4	chr19:45543600-45546400	Genic enhancers	Primary T helper cells fromperipheralblood	blood
5	chr19:45543600-45548800	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr19:45543600-45549400	Strong transcription	Fetal Lung	lung
7	chr19:45543600-45549600	Strong transcription	HUES48 Cell Line	embryonic stem cell
8	chr19:45543600-45549600	Strong transcription	Placenta Amnion	Placenta Amnion
9	chr19:45543600-45549800	Strong transcription	H1 Cell Line	embryonic stem cell
10	chr19:45543600-45550000	Strong transcription	H9 Cell Line	embryonic stem cell
11	chr19:45543600-45550000	Strong transcription	Aorta	Aorta
12	chr19:45543600-45550000	Strong transcription	Thymus	Thymus
13	chr19:45543600-45550400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr19:45543600-45550600	Strong transcription	HUES6 Cell Line	embryonic stem cell
15	chr19:45543600-45550800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
16	chr19:45543600-45551000	Strong transcription	NHDF-Ad	bronchial
17	chr19:45543800-45549000	Strong transcription	Primary T cells from cord blood	blood
18	chr19:45543800-45549200	Genic enhancers	Liver	Liver
19	chr19:45543800-45550000	Strong transcription	Osteobl	bone
20	chr19:45543800-45550600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
21	chr19:45543800-45550800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr19:45543800-45551000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr19:45543800-45552400	Weak transcription	Psoas Muscle	Psoas
24	chr19:45544000-45546800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr19:45544000-45547400	Strong transcription	Gastric	stomach
26	chr19:45544000-45547600	Strong transcription	Rectal Mucosa Donor 31	rectum
27	chr19:45544000-45548000	Strong transcription	Fetal Intestine Small	intestine
28	chr19:45544000-45548200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr19:45544000-45548400	Strong transcription	Fetal Kidney	kidney
30	chr19:45544000-45548800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr19:45544000-45548800	Genic enhancers	Brain Hippocampus Middle	brain
32	chr19:45544000-45548800	Weak transcription	Fetal Heart	heart
33	chr19:45544000-45548800	Strong transcription	Rectal Mucosa Donor 29	rectum
34	chr19:45544000-45549000	Strong transcription	Sigmoid Colon	Sigmoid Colon
35	chr19:45544000-45549000	Strong transcription	NH-A	brain
36	chr19:45544000-45549600	Strong transcription	iPS DF 19.11 Cell Line	embryonic stem cell
37	chr19:45544000-45549600	Strong transcription	Muscle Satellite Cultured Cells	--
38	chr19:45544000-45550000	Strong transcription	A549	lung
39	chr19:45544000-45551000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr19:45544000-45551000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr19:45544200-45547600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr19:45544200-45550400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr19:45544200-45551400	Strong transcription	Fetal Stomach	stomach
44	chr19:45544200-45552400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
45	chr19:45544200-45573400	Weak transcription	Fetal Brain Male	brain
46	chr19:45544400-45549000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr19:45544600-45549000	Strong transcription	HUVEC	blood vessel
48	chr19:45544800-45549400	Strong transcription	Primary hematopoietic stem cells	blood
49	chr19:45544800-45550400	Strong transcription	Fetal Muscle Leg	muscle
50	chr19:45545000-45546800	Weak transcription	HMEC	breast

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