Variant report

Variant	rs58586560
Chromosome Location	chr8:59468031-59468032
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr8:59466361..59468557-chr8:59520304..59521989,2	K562	blood:
2	chr8:59467543..59471548-chr8:59563276..59565061,3	K562	blood:
3	chr8:59466189..59470274-chr8:59507050..59509287,3	MCF-7	breast:
4	chr8:59432563..59435157-chr8:59465876..59468131,3	K562	blood:
5	chr8:59465077..59468758-chr8:59483246..59485751,3	MCF-7	breast:
6	chr8:59460875..59463855-chr8:59467484..59470107,3	K562	blood:
7	chr8:59430665..59433091-chr8:59466254..59469171,2	MCF-7	breast:
8	chr8:59417943..59419729-chr8:59466208..59468213,2	K562	blood:
9	chr8:59463736..59468207-chr8:59482369..59488045,4	K562	blood:

No data

Variant related genes	Relation type
ENSG00000137575	Chromatin interaction
ENSG00000035681	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs16923547	0.82[ASN][1000 genomes]
rs16923573	0.97[ASN][1000 genomes]
rs3739326	0.97[ASN][1000 genomes]
rs57119091	0.82[ASN][1000 genomes]
rs57137362	0.97[ASN][1000 genomes]
rs58276148	0.97[ASN][1000 genomes]
rs59644857	0.96[ASN][1000 genomes]
rs60163136	0.84[ASN][1000 genomes]
rs60600243	0.97[ASN][1000 genomes]
rs7833413	0.97[ASN][1000 genomes]
rs8192873	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv890938	chr8:59355053-59809785	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59464600-59468200	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr8:59464800-59468600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr8:59465000-59468200	Active TSS	Brain Anterior Caudate	brain
4	chr8:59465000-59468200	Active TSS	Right Ventricle	heart
5	chr8:59465000-59468400	Active TSS	Right Atrium	heart
6	chr8:59465000-59468400	Active TSS	NHLF	lung
7	chr8:59465000-59469200	Active TSS	Fetal Brain Female	brain
8	chr8:59465000-59472200	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr8:59465200-59468400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr8:59465200-59468400	Active TSS	Psoas Muscle	Psoas
11	chr8:59465400-59468200	Active TSS	Thymus	Thymus
12	chr8:59465400-59469000	Transcr. at gene 5' and 3'	Primary T helper 17 cells PMA-I stimulated	--
13	chr8:59465600-59468200	Active TSS	Placenta	Placenta
14	chr8:59465600-59469000	Active TSS	Stomach Smooth Muscle	stomach
15	chr8:59466000-59468800	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr8:59466400-59469000	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
17	chr8:59466400-59470200	Weak transcription	Gastric	stomach
18	chr8:59466400-59472600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr8:59466600-59468200	Flanking Active TSS	Dnd41	blood
20	chr8:59466600-59468800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr8:59466600-59470200	Weak transcription	Spleen	Spleen
22	chr8:59466600-59470800	Weak transcription	Lung	lung
23	chr8:59466600-59472600	Weak transcription	Esophagus	oesophagus
24	chr8:59466600-59472600	Weak transcription	Pancreas	Pancrea
25	chr8:59466800-59468200	Flanking Active TSS	Primary B cells from cord blood	blood
26	chr8:59466800-59470200	Weak transcription	Sigmoid Colon	Sigmoid Colon
27	chr8:59466800-59472400	Weak transcription	Aorta	Aorta
28	chr8:59466800-59472800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr8:59466800-59479800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
30	chr8:59467000-59468200	Flanking Active TSS	Primary hematopoietic stem cells	blood
31	chr8:59467000-59468200	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
32	chr8:59467000-59468200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr8:59467000-59468200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr8:59467000-59468400	Enhancers	Fetal Intestine Small	intestine
35	chr8:59467000-59472200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
36	chr8:59467000-59472400	Weak transcription	Fetal Muscle Trunk	muscle
37	chr8:59467000-59472600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
38	chr8:59467000-59472800	Weak transcription	H9 Cell Line	embryonic stem cell
39	chr8:59467200-59468200	Flanking Active TSS	Osteobl	bone
40	chr8:59467200-59468400	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr8:59467200-59468400	Flanking Active TSS	Fetal Lung	lung
42	chr8:59467200-59468600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr8:59467200-59468800	Weak transcription	Fetal Stomach	stomach
44	chr8:59467200-59468800	Weak transcription	Stomach Mucosa	stomach
45	chr8:59467200-59469200	Flanking Active TSS	Adipose Nuclei	Adipose
46	chr8:59467200-59469400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
47	chr8:59467200-59486000	Weak transcription	Brain Angular Gyrus	brain
48	chr8:59467400-59468200	Weak transcription	Primary T cells fromperipheralblood	blood
49	chr8:59467400-59468200	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
50	chr8:59467400-59468400	Enhancers	Brain Inferior Temporal Lobe	brain

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