Variant report

Variant	rs58588463
Chromosome Location	chr11:102038859-102038860
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:102038383..102041137-chr11:102046263..102048631,2	MCF-7	breast:
2	chr11:102033837..102035786-chr11:102037370..102039642,2	K562	blood:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs61198026	1.00[AFR][1000 genomes]
rs61383713	1.00[AFR][1000 genomes]
rs73577837	0.92[AFR][1000 genomes]
rs73582019	1.00[AFR][1000 genomes]
rs73582037	1.00[AFR][1000 genomes]
rs73582046	1.00[AFR][1000 genomes]
rs73582051	1.00[AFR][1000 genomes]
rs73582053	1.00[AFR][1000 genomes]
rs73582091	1.00[AFR][1000 genomes]
rs73582099	0.89[AFR][1000 genomes]
rs73583907	1.00[AFR][1000 genomes]
rs73583910	1.00[AFR][1000 genomes]
rs73583927	1.00[AFR][1000 genomes]
rs73583929	1.00[AFR][1000 genomes]
rs73585834	0.92[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3362945	chr11:101736547-102114246	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv898333	chr11:101832670-102079986	Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv1052348	chr11:101987090-102255753	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
4	nsv556141	chr11:101988061-102207851	Weak transcription Genic enhancers Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
5	nsv1050961	chr11:101993880-102253717	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
6	nsv1051735	chr11:101993880-102255753	Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
7	nsv530646	chr11:102000840-102238992	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
8	nsv832251	chr11:102012295-102181744	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
9	nsv1043388	chr11:102017719-102172857	Genic enhancers Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:83 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:102010400-102039000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr11:102020400-102049000	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr11:102025600-102039000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr11:102026400-102059400	Weak transcription	Fetal Brain Male	brain
5	chr11:102026600-102045400	Weak transcription	Stomach Smooth Muscle	stomach
6	chr11:102028000-102062800	Weak transcription	Duodenum Mucosa	Duodenum
7	chr11:102028600-102039000	Weak transcription	NHLF	lung
8	chr11:102028600-102055200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr11:102029200-102045400	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr11:102029200-102067600	Weak transcription	HSMMtube	muscle
11	chr11:102029400-102042000	Weak transcription	Rectal Smooth Muscle	rectum
12	chr11:102029400-102050000	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr11:102030200-102041400	Weak transcription	HUVEC	blood vessel
14	chr11:102030200-102048600	Weak transcription	Skeletal Muscle Female	skeletal muscle
15	chr11:102030600-102042200	Weak transcription	Stomach Mucosa	stomach
16	chr11:102031200-102043400	Weak transcription	Pancreas	Pancrea
17	chr11:102031600-102039200	Weak transcription	Colon Smooth Muscle	Colon
18	chr11:102031800-102042600	Weak transcription	Aorta	Aorta
19	chr11:102033400-102042800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr11:102033400-102045600	Weak transcription	Spleen	Spleen
21	chr11:102033400-102061000	Weak transcription	Right Ventricle	heart
22	chr11:102034400-102039000	Weak transcription	HUES64 Cell Line	embryonic stem cell
23	chr11:102034400-102055200	Weak transcription	Cortex derived primary cultured neurospheres	brain
24	chr11:102034400-102057200	Weak transcription	H1 Cell Line	embryonic stem cell
25	chr11:102034600-102039000	Weak transcription	HUES6 Cell Line	embryonic stem cell
26	chr11:102034600-102039200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
27	chr11:102034600-102040800	Weak transcription	Left Ventricle	heart
28	chr11:102034600-102040800	Weak transcription	A549	lung
29	chr11:102034600-102042200	Weak transcription	Adipose Nuclei	Adipose
30	chr11:102034600-102042600	Weak transcription	Placenta	Placenta
31	chr11:102034600-102042800	Weak transcription	Esophagus	oesophagus
32	chr11:102034600-102043400	Weak transcription	Gastric	stomach
33	chr11:102034600-102047600	Weak transcription	Lung	lung
34	chr11:102034600-102049200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
35	chr11:102034600-102049200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
36	chr11:102034600-102076800	Weak transcription	Rectal Mucosa Donor 29	rectum
37	chr11:102034800-102039200	Weak transcription	HUES48 Cell Line	embryonic stem cell
38	chr11:102035400-102039000	Weak transcription	Hela-S3	cervix
39	chr11:102035400-102039200	Weak transcription	NH-A	brain
40	chr11:102035400-102055600	Weak transcription	Rectal Mucosa Donor 31	rectum
41	chr11:102035600-102039200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr11:102035800-102045400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
43	chr11:102036000-102039000	Weak transcription	Muscle Satellite Cultured Cells	--
44	chr11:102036000-102042800	Weak transcription	Ovary	ovary
45	chr11:102036000-102045000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
46	chr11:102036000-102045000	Weak transcription	Fetal Muscle Trunk	muscle
47	chr11:102036000-102069400	Weak transcription	Sigmoid Colon	Sigmoid Colon
48	chr11:102036200-102039200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
49	chr11:102036200-102045400	Weak transcription	Fetal Intestine Large	intestine
50	chr11:102036200-102050200	Weak transcription	Fetal Intestine Small	intestine

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