Variant report

Variant	rs58589040
Chromosome Location	chr15:93601479-93601480
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:93596138..93597696-chr15:93600368..93602505,2	MCF-7	breast:
2	chr15:93594974..93598875-chr15:93599880..93602027,5	K562	blood:
3	chr15:93596483..93598311-chr15:93599880..93601981,2	K562	blood:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs12901651	1.00[ASN][1000 genomes]
rs12915072	1.00[ASN][1000 genomes]
rs35327372	1.00[ASN][1000 genomes]
rs56062215	1.00[ASN][1000 genomes]
rs57114827	0.96[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948738	chr15:93070742-93728147	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	169 gene(s)	inside rSNPs	diseases
2	nsv530846	chr15:93323949-94030462	Active TSS Strong transcription Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	153 gene(s)	inside rSNPs	diseases
3	nsv948881	chr15:93383740-93603608	Genic enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
4	nsv1041668	chr15:93558188-93611598	Bivalent Enhancer Strong transcription Genic enhancers Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
5	nsv1052724	chr15:93569701-93622666	Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
6	nsv525266	chr15:93570723-93602056	Weak transcription Strong transcription Enhancers Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
7	nsv904503	chr15:93570723-93605090	Enhancers Strong transcription ZNF genes & repeats Weak transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
8	nsv523617	chr15:93570723-93610139	Weak transcription Enhancers Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
9	nsv1054502	chr15:93580672-93611598	Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Strong transcription Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
10	nsv542472	chr15:93580672-93611598	Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
11	nsv833096	chr15:93584742-93766257	Weak transcription Enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:93581600-93603600	Weak transcription	Right Atrium	heart
2	chr15:93588600-93605400	Weak transcription	Colonic Mucosa	Colon
3	chr15:93589800-93602600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr15:93590200-93603600	Weak transcription	Left Ventricle	heart
5	chr15:93590400-93601600	Weak transcription	Spleen	Spleen
6	chr15:93590400-93601800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr15:93590400-93604600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr15:93592000-93602400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr15:93592200-93607600	Weak transcription	Thymus	Thymus
10	chr15:93592600-93602600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr15:93592600-93604000	Weak transcription	Brain Angular Gyrus	brain
12	chr15:93594000-93604600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr15:93595200-93604800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr15:93595600-93604200	Weak transcription	Fetal Intestine Small	intestine
15	chr15:93595600-93604600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr15:93597000-93604000	Weak transcription	Lung	lung
17	chr15:93598000-93601600	Transcr. at gene 5' and 3'	Stomach Smooth Muscle	stomach
18	chr15:93598400-93602400	Genic enhancers	ES-UCSF4 Cell Line	embryonic stem cell
19	chr15:93598400-93604200	Genic enhancers	Fetal Muscle Trunk	muscle
20	chr15:93598400-93613400	Genic enhancers	Fetal Muscle Leg	muscle
21	chr15:93598600-93602000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr15:93598600-93602800	Weak transcription	H9 Cell Line	embryonic stem cell
23	chr15:93598600-93603400	Enhancers	Brain Germinal Matrix	brain
24	chr15:93598600-93604000	Enhancers	Skeletal Muscle Female	skeletal muscle
25	chr15:93598600-93604200	Weak transcription	Gastric	stomach
26	chr15:93598600-93604400	Weak transcription	Fetal Lung	lung
27	chr15:93598600-93610000	Weak transcription	Aorta	Aorta
28	chr15:93598800-93601600	Genic enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr15:93598800-93604000	Weak transcription	Brain Hippocampus Middle	brain
30	chr15:93598800-93609200	Genic enhancers	Fetal Stomach	stomach
31	chr15:93599000-93602200	Genic enhancers	Skeletal Muscle Male	skeletal muscle
32	chr15:93599000-93614000	Genic enhancers	Cortex derived primary cultured neurospheres	brain
33	chr15:93599200-93604600	Weak transcription	Adipose Nuclei	Adipose
34	chr15:93599400-93602200	Weak transcription	HUES64 Cell Line	embryonic stem cell
35	chr15:93599400-93604200	Enhancers	Colon Smooth Muscle	Colon
36	chr15:93599800-93604600	Enhancers	Rectal Smooth Muscle	rectum
37	chr15:93599800-93604800	Enhancers	Psoas Muscle	Psoas
38	chr15:93600000-93604400	Genic enhancers	H1 Cell Line	embryonic stem cell
39	chr15:93600200-93604600	Enhancers	Duodenum Smooth Muscle	Duodenum
40	chr15:93600400-93603400	Weak transcription	Right Ventricle	heart
41	chr15:93600400-93603800	Weak transcription	Dnd41	blood
42	chr15:93600400-93604600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr15:93600600-93602000	Strong transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr15:93600600-93603000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
45	chr15:93600600-93604000	Strong transcription	Esophagus	oesophagus
46	chr15:93600800-93601600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
47	chr15:93600800-93601800	Enhancers	Brain Inferior Temporal Lobe	brain
48	chr15:93600800-93602600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
49	chr15:93600800-93603400	Genic enhancers	HUES48 Cell Line	embryonic stem cell
50	chr15:93600800-93604000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links