Variant report

Variant	rs58592141
Chromosome Location	chr4:55870144-55870145
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10021281	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10471218	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28418957	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28460101	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28690930	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28820633	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6811792	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6813048	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73816902	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9631802	0.82[AFR][1000 genomes]
rs9994473	0.83[AMR][1000 genomes]
rs9999041	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526344	chr4:55522488-56231119	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv948758	chr4:55748430-55887962	Enhancers Flanking Active TSS Active TSS Weak transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv829939	chr4:55856771-56005011	Enhancers Flanking Bivalent TSS/Enh Genic enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:55865800-55870600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr4:55865800-55870600	Weak transcription	Adipose Nuclei	Adipose
3	chr4:55870000-55872800	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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