Variant report

Variant	rs58595842
Chromosome Location	chr3:20901316-20901317
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1391862	0.94[ASN][1000 genomes]
rs1499004	0.86[EUR][1000 genomes]
rs17007701	0.90[EUR][1000 genomes]
rs17811881	0.94[ASN][1000 genomes]
rs35637371	0.86[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs71310226	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876598	chr3:20242143-20970042	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv999025	chr3:20738244-21042249	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv834629	chr3:20878902-21057592	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv1831300	chr3:20886763-20919920	ZNF genes & repeats Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	esv1850674	chr3:20886763-20919920	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	esv1826380	chr3:20895742-20970042	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:20895800-20901800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr3:20895800-20901800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr3:20900400-20901600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr3:20900600-20901600	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr3:20900600-20901600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr3:20900600-20901800	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr3:20901000-20902000	Enhancers	H9 Cell Line	embryonic stem cell
8	chr3:20901000-20902600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr3:20901200-20901600	Weak transcription	HUES48 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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